Results 41 to 50 of about 1,283,302 (227)
A safe and complete algorithm for metagenomic assembly [PDF]
Algorithms for Molecular Biology, 2018 Reconstructing the genome of a species from short fragments is one of the oldest bioinformatics problems. Metagenomic assembly is a variant of the problem asking to reconstruct the circular genomes of all bacterial species present in a sequencing sample.
Nidia Obscura Acosta +2 more
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Metaphor—A workflow for streamlined assembly and binning of metagenomes
GigaScience, 2022 Abstract Recent advances in bioinformatics and high-throughput sequencing have enabled the large-scale recovery of genomes from metagenomes. This has the potential to bring important insights as researchers can bypass cultivation and analyze genomes sourced directly from environmental samples.
Vinícius W Salazar +7 more
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Frontiers in Microbiology, 2021 Microbial communities in incipient soil systems serve as the only biotic force shaping landscape evolution. However, the underlying ecological forces shaping microbial community structure and function are inadequately understood.
Aditi Sengupta +16 more
doaj +1 more source
Multilocus sequence typing breathes life into a microbial metagenome [PDF]
, 2006 Shot-gun sequencing of DNA isolated from the environment and the assembly of metagenomes from the resulting data has considerably advanced the study of microbial diversity.
Vandamme Peter +23 more
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DeepMAsED: evaluating the quality of metagenomic assemblies
Bioinformatics, 2020 Abstract Motivation Methodological advances in metagenome assembly are rapidly increasing in the number of published metagenome assemblies. However, identifying misassemblies is challenging due to a lack of closely related reference genomes that can act as pseudo ground truth.
Olga Mineeva +4 more
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Assembling metagenomes, one community at a time [PDF]
BMC Genomics, 2017 Abstract Background Metagenomics allows unprecedented access to uncultured environmental microorganisms. The analysis of metagenomic sequences facilitates gene prediction and annotation, and enables the assembly of draft genomes, including uncultured members of a community.
van der Walt, Andries J. +5 more
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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities [PDF]
PeerJ, 2015 Grouping large genomic fragments assembled from shotgun metagenomic sequences to deconvolute complex microbial communities, or metagenome binning, enables the study of individual organisms and their interactions.
Dongwan D. Kang +3 more
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Approaches to metagenomic classification and assembly
2019 42nd International Convention on Information and Communication Technology, Electronics and Microelectronics (MIPRO), 2019 Microbiome is an ecological community of commensal, symbiotic, and pathogenic microorganisms that share the same environment. The study of microbiome, i.e. genetic material sampled directly from environmental samples is called metagenomics. In recent years, genome sequencing methods have dramatically improved and the number and variety of sequenced ...
Josip Maric, Mile Sikic
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mSystems, 2021 The DOE JGI Metagenome Workflow is designed for processing metagenomic data sets starting from Illumina fastq files. It performs data preprocessing, error correction, assembly, structural and functional annotation, and binning.
Alicia Clum +18 more
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, 2022 ATLAS - Three commands to start analyzing your metagenome ...
Silas Kieser +14 more
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