Results 61 to 70 of about 1,283,302 (227)

Metagenome assembly contig sizes

, 2014
Metagenome assembly contig ...
Christopher Beitel (518618)
core   +1 more source

A review of computational tools for generating metagenome-assembled genomes from metagenomic sequencing data

Computational and Structural Biotechnology Journal, 2021
Metagenomic sequencing provides a culture-independent avenue to investigate the complex microbial communities by constructing metagenome-assembled genomes (MAGs).
Chao Yang, Debajyoti Chowdhury, Zhenmiao Zhang, William K. Cheung, Aiping Lu, Zhaoxiang Bian, Lu Zhang   +6 more
doaj   +1 more source

Metagenome-assembled genome (MAG) information from Nome Creek, Alaska soils

, 2019
Information on 54 prokaryotic metagenome-assembled genome (MAG) sequences binned from a co-assembly of 12 soil samples from this wildfire impacted upland Alaskan boreal forest soils.
Neslihan Tas (6191723)
core   +1 more source

Improved Assembly of Metagenome-Assembled Genomes and Viruses in Tibetan Saline Lake Sediment by HiFi Metagenomic Sequencing

Microbiology Spectrum, 2023
To expand the understanding of microbial dark matter in the environment, we did the first comparative evaluation of multiple assembly strategies based on high-throughput short-read and HiFi data from lake sediments metagenomic sequencing. The results demonstrated great improvement of the ‘Hybrid’ assembly method (short-read next-generation sequencing ...
Ye Tao, Fan Xun, Cheng Zhao, Zhendu Mao, Biao Li, Peng Xing, Qinglong L. Wu   +6 more
openaire   +3 more sources

Kelpie: generating full-length ‘amplicons’ from whole-metagenome datasets [PDF]

PeerJ, 2019
Introduction Whole-metagenome sequencing can be a rich source of information about the structure and function of entire metagenomic communities, but getting accurate and reliable results from these datasets can be challenging.
Paul Greenfield, Nai Tran-Dinh, David Midgley   +2 more
doaj   +2 more sources

Binnacle: Using Scaffolds to Improve the Contiguity and Quality of Metagenomic Bins

Frontiers in Microbiology, 2021
High-throughput sequencing has revolutionized the field of microbiology, however, reconstructing complete genomes of organisms from whole metagenomic shotgun sequencing data remains a challenge.
Harihara Subrahmaniam Muralidharan, Nidhi Shah, Jacquelyn S. Meisel, Mihai Pop   +3 more
doaj   +1 more source

Preliminary High-Throughput Metagenome Assembly [PDF]

, 2007
Metagenome data sets present a qualitatively different assembly problem than traditional single-organism whole-genome shotgun (WGS) assembly. The unique aspects of such projects include the presence of a potentially large number of distinct organisms and
Dusheyko, Serge
core   +1 more source

Brugia malayi gDNA metagenome assembly all contigs

, 2023
We performed gDNA sequencing on Brugia malayi adult female samples containing the endosymbiotic bacterium Wolbachia. The reads were randomly downsampled to 10 million reads. Metagenome assembly was performed using metaSpades.
Lindsey Cantin (17513745)
core   +1 more source

The chromosomal genome sequence of the sponge Phakellia ventilabrum (Linnaeus, 1767) and its associated microbial metagenome sequences [version 1; peer review: 2 approved]

Wellcome Open Research
We present a genome assembly from a specimen of Phakellia ventilabrum (Porifera; Demospongiae; Bubarida; Bubaridae). The genome sequence has a total length of 211.92 megabases.
Eerik Aunin, Victoria McKenna, Ute Hentschel, Sergi Taboada, Carles Galià, Kathrin Busch, Elizabeth Sinclair, Ana Riesgo, Graeme Oatley, Camilla Santos, Haoyu Niu, Dirk Erpenbeck, Noah Gettle, Michael Paulini, Rebecca O’Brien   +14 more
doaj   +1 more source

Taxonomic, Genomic, and Functional Variation in the Gut Microbiomes of Wild Spotted Hyenas Across 2 Decades of Study

mSystems, 2023
The gut microbiome provides vital functions for mammalian hosts, yet research on its variability and function across adult life spans and multiple generations is limited in large mammalian carnivores.
Connie A. Rojas, Kay E. Holekamp, Mariette Viladomat Jasso, Valeria Souza, Jonathan A. Eisen, Kevin R. Theis   +5 more
doaj   +1 more source