Results 21 to 30 of about 30,341 (174)
BinaRena: a dedicated interactive platform for human-guided exploration and binning of metagenomes
Microbiome, 2023 Background Exploring metagenomic contigs and “binning” them into metagenome-assembled genomes (MAGs) are essential for the delineation of functional and evolutionary guilds within microbial communities.
Michael J. Pavia +4 more
doaj +1 more source
Genome Biology, 2023 Binning aims to recover microbial genomes from metagenomic data. For complex metagenomic communities, the available binning methods are far from satisfactory, which usually do not fully use different types of features and important biological knowledge ...
Ziye Wang +4 more
doaj +1 more source
MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics
mSystems, 2022 Metagenome-assembled genomes (MAGs) represent individual genomes recovered from metagenomic data. MAGs are extremely useful to analyze uncultured microbial genomic diversity, as well as to characterize associated functional and metabolic potential in ...
Benjamin Churcheward +4 more
doaj +1 more source
Analysis of binning of normals for spherical harmonic cross-correlation [PDF]
, 2012 Spherical harmonic cross-correlation is a robust registration technique that uses the normals of two overlapping point clouds to bring them into coarse rotational alignment.
Michael J. Cree +5 more
core +1 more source
BinSanity: unsupervised clustering of environmental microbial assemblies using coverage and affinity propagation [PDF]
PeerJ, 2017 Metagenomics has become an integral part of defining microbial diversity in various environments. Many ecosystems have characteristically low biomass and few cultured representatives.
Elaina D. Graham +2 more
doaj +2 more sources
Noncanonical Peloruside A Biosynthesis by an Uncultivated Verrucomicrobiota Symbiont
Angewandte Chemie, EarlyView.Noncanonical biochemistry of the peloruside PKS characterized in this work, comprising double bond generation by a noncanonical tridomain (blue), acetyl‐CoA recycling (orange), and proofreading systems (purple and yellow). The Z‐double bond is installed by TEB1 through O‐acetylation and acetate elimination. The acyl ligase PelB (AL, orange) selectively
Amy E. Fraley +11 more
wiley +2 more sources
metagenome-atlas/atlas: v2.12.0
, 2022 What's Changed GTDB-tk requires rule extract_gtdb to run first by @Waschina in https://github.com/metagenome-atlas/atlas/pull/551 use Galah instead of Drep use bbsplit for mapping to genomes (maybe move to minimap in future) faster gene catalogs ...
Silas Kieser +16 more
core +1 more source
metagenome-atlas/atlas: v2.9.0
, 2022 What's Changed Start an atlas project from public data in SRA Docs Make atlas ready for python 3.10 https://github.com/metagenome-atlas/atlas/pull/498 Add strain profiling using inStrain You can run atlas run genomes strains New Contributors @alienzj
Silas Kieser +14 more
core +1 more source
Biases in genome reconstruction from metagenomic data [PDF]
PeerJ, 2020 Background Advances in sequencing, assembly, and assortment of contigs into species-specific bins has enabled the reconstruction of genomes from metagenomic data (MAGs).
William C. Nelson +2 more
doaj +2 more sources
metagenome-atlas/atlas: Toiminnot
, 2021 This is a major update of metagenome-atlas. It was developed for the 3-day course in Finnland, that's also why it has a finish release name. What is new?
Silas Kieser +12 more
core +1 more source