Results 41 to 50 of about 30,341 (174)

Insights into rumen microbial biosynthetic gene cluster diversity through genome-resolved metagenomics

Communications Biology, 2021
Anderson and Fernando use metagenomic binning approaches to reconstruct 2,809 microbial metagenome-assembled genomes from ruminants, and perform phylogenomic analyses on the biosynthetic gene clusters from over 8,000 total rumen microbial genomes.
Christopher L. Anderson, Samodha C. Fernando   +1 more
doaj   +1 more source

DataSheet_1_Reads Binning Improves Alignment-Free Metagenome Comparison.docx

, 2019
Comparing metagenomic samples is a critical step in understanding the relationships among microbial communities. Recently, next-generation sequencing (NGS) technologies have produced a massive amount of short reads data for microbial communities from ...
Jie Ren (176083), Fengzhu Sun (15206), Kai Song (107003)   +2 more
core   +1 more source

metagenome-atlas/atlas: Bug fixes Drep

, 2021
ATLAS - Three commands to start analyzing your metagenome ...
Silas Kieser, Jackson M. Tsuji, Richard Allen White III, Christopher Bottoms, Joe Brown, Sean M. Colby, Vladimir Mikryukov, wangzc, Chris Overall, Mattias de Hollander, C. Titus Brown, Colin Brislawn   +11 more
core   +1 more source

metagenome-atlas/atlas: GTDB v 207 low memory profiling

, 2022
New Features GTDB version 207 Low memory taxonomic annotation Minor changes Fix Typos by @roshni-b in https://github.com/metagenome-atlas/atlas/pull/520 Speed up DRAM annotations by @jmtsuji in https://github.com/metagenome-atlas/atlas/pull/534 Full ...
Silas Kieser, Richard Allen White III, Joe Brown, Vladimir Mikryukov, Roshni Biswas, Yan Hui, Jackson M. Tsuji, Christopher Bottoms, Cedric Midoux, Jie Zhu, Sean M. Colby, wangzc, Chris Overall, Mattias de Hollander, C. Titus Brown, Colin Brislawn   +15 more
core   +1 more source

Optimasi Parameter pada Fast Correlation Based Fiter Menggunakan Algoritme Genetika untuk Klasifikasi Metagenom

JEPIN (Jurnal Edukasi dan Penelitian Informatika), 2018
Metagenome merupakan mikroorganisme yang diambil secara langsung dari alam. Proses sequencing genom dari metagenome mengakibatkan bercampurnya berbagai organisme. Hal ini menyebabkan kesulitan pada proses perakitan DNA. Oleh karena itu, dibutuhkan proses
Toto Haryanto, Hanif Bagus Guritno, Aziz Kustiyo, Irman Hermadi   +3 more
doaj   +1 more source

A Metagenome‐Assembled Genome Catalog From the Global Ruminant Microbiomes

Animal Research and One Health, EarlyView.
The Ruminant Gastrointestinal MAG Catalog (RGMC) is a comprehensive global resource offering 40,812 strain‐level genomes across 53 bacterial and 4 archaeal classes. It greatly surpasses prior efforts in scale and diversity, serving as an essential foundation for research in ruminant nutrition, microbial function, and methane mitigation.
Shizhe Zhang, Qiushuang Li, Bingzi Ouyang, Wenxing Wang, Xiang Zhou, Xiumin Zhang, Rong Wang, Zhiliang Tan, Min Wang   +8 more
wiley   +1 more source

BinSPreader binning refining protocol

, 2023
Metagenome analysis based on high-throughput sequencing data often includes contig binning as an essential step to recover complete genomes from metagenomic data (MAGs).
Sofia Ochkalova (14514773), Anton Korobeynikov (5614652)   +1 more
core   +1 more source

Multi‐omics reveals gastrointestinal metabolic disorder‐induced diarrhea in postpartum dairy cows

iMetaOmics, EarlyView.
Nutritional diarrhea is a pervasive, costly challenge in dairy production. Using integrated metagenomic and metabolomic profiling, we identified coordinated microbial and metabolic alterations across the rumen, hindgut, and serum. In the rumen, enrichment of Prevotella sp.
Weixuan Tang, Yangyi Hao, Jiawei Zhang, Yajing Wang, Zhijun Cao, Hongjian Yang, Wei Wang, Shengli Li   +7 more
wiley   +1 more source

Fairy: fast approximate coverage for multi-sample metagenomic binning

Microbiome
Background Metagenomic binning, the clustering of assembled contigs that belong to the same genome, is a crucial step for recovering metagenome-assembled genomes (MAGs).
Jim Shaw, Yun William Yu
doaj   +1 more source

gbtools: Interactive visualization of metagenome bins in R

Frontiers in Microbiology, 2015
Improvements in DNA sequencing technology have increased the amount and quality of sequences that can be obtained from metagenomic samples, making it practical to extract individual microbial genomes from metagenomic assemblies (binning).
Brandon Kwee Boon Seah, Harald Ronald Gruber-Vodicka   +1 more
doaj   +1 more source