Results 11 to 20 of about 30,876 (211)

Microbial characterization based on multifractal analysis of metagenomes [PDF]

, 2023
IntroductionThe species diversity of microbiomes is a cutting-edge concept in metagenomic research. In this study, we propose a multifractal analysis for metagenomic research.Method and ResultsFirstly, we visualized the chaotic game representation (CGR ...
Yu-jie Huang, Guo-sheng Han, Yuan-lin Ma, Zu-guo Yu, Xian-hua Xie   +4 more
core   +1 more source

PacBio-Marine-Metagenomes

, 2022
Scripts for analyzing sequence data from 14 PacBio long-read shotgun metagenomes and matching short-read Illumina metagenomes generated from marine water column ...
Nastassia Patin (9109532)
core   +1 more source

Metagenomics and antibiotics [PDF]

Clinical Microbiology and Infection, 2012
Most of the bacterial species that form part of the biosphere have never been cultivated. In this situation, a comprehensive study of bacterial communities requires the utilization of non-culture-based methods, which have been named metagenomics.
Garmendia, L., Hernandez, A., Sanchez, M.B., Martinez, J.L.   +3 more
openaire   +2 more sources

Metagenomic Thermometer

DNA Research, 2022
Abstract Various microorganisms exist in environments, and each of which has an optimal growth temperature (OGT). The relationship between genomic information and OGT of each species has long been studied, and one such study revealed that OGT of prokaryotes can be accurately predicted based on the fraction of seven ...
Masaomi Kurokawa, Koichi Higashi, Keisuke Yoshida, Tomohiko Sato, Shigenori Maruyama, Hiroshi Mori, Ken Kurokawa   +6 more
openaire   +2 more sources

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes [PDF]

, 2013
Nucleo-cytoplasmic large DNA viruses (NCLDVs) constitute a group of eukaryotic viruses that can have crucial ecological roles in the sea by accelerating the turnover of their unicellular hosts or by causing diseases in animals. To better characterize the
Moreau, Hervé, Lima-Medez, Gipsi, Department of Applied Biological Sciences (DBIT), Vrije Universiteit Brussel, Brussels, Belgium, Bork, Peer, Subirana, Lucie, Wincker, Patrick, Poulain, Julie, Sarmento, Hugo, Desdevises, Yves, Villar, Emilie, Kandels-Lewis, Stefanie, Acinas, Silvia G., Faust, Karoline, Ogata, Hiroyuki, Grimsley, Nigel, Pesant, Stéphane, Jaillon, Olivier, Claverie, Jean-Michel, Hingamp, Pascal, Not, Fabrice, Karsenti, Eric, Clerissi, Camille, Ferrera, Isabel, de Vargas, Colomban, Sunagawa, Shinichi, Raes, Jeroen   +25 more
core   +1 more source

Taxonomic distribution of metabolic functions in bacteria associated with Trichodesmium consortia

mSystems, 2023
The photosynthetic and diazotrophic cyanobacterium Trichodesmium is a key contributor to marine biogeochemical cycles in the subtropical-oligotrophic oceans.
Coco Koedooder, Futing Zhang, Siyuan Wang, Subhajit Basu, Sheean T. Haley, Nikola Tolic, Carrie D. Nicora, Tijana Glavina del Rio, Sonya T. Dyhrman, Martha Gledhill, Rene M. Boiteau, Maxim Rubin-Blum, Yeala Shaked   +12 more
doaj   +1 more source

Distribution and Genomic Variation of Thermophilic Cyanobacteria in Diverse Microbial Mats at the Upper Temperature Limits of Photosynthesis

mSystems, 2022
Thermophilic cyanobacteria have been extensively studied in Yellowstone National Park (YNP) hot springs, particularly during decades of work on the thick laminated mats of Octopus and Mushroom springs.
Eric D. Kees, Senthil K. Murugapiran, Annastacia C. Bennett, Trinity L. Hamilton   +3 more
doaj   +1 more source

A. pittii MAGs from MT1 environmental metagenomes

, 2022
Assembled A.
Braden Tierney (6581300)
core   +1 more source

A Primer on Metagenomics

PLoS Computational Biology, 2010
Metagenomics is a discipline that enables the genomic study of uncultured microorganisms. Faster, cheaper sequencing technologies and the ability to sequence uncultured microbes sampled directly from their habitats are expanding and transforming our view of the microbial world.
Bourne, Philip E., Wooley, John C., Godzik, Adam, Friedberg, Iddo   +3 more
openaire   +7 more sources

Beyond Nuclear Ribosomal DNA Sequences: Evolution, Taxonomy, and Closest Known Saprobic Relatives of Powdery Mildew Fungi (Erysiphaceae) Inferred From Their First Comprehensive Genome-Scale Phylogenetic Analyses

Frontiers in Microbiology, 2022
Powdery mildew fungi (Erysiphaceae), common obligate biotrophic pathogens of many plants, including important agricultural and horticultural crops, represent a monophyletic lineage within the Ascomycota.
Niloofar Vaghefi, Niloofar Vaghefi, Stefan Kusch, Márk Z. Németh, Diána Seress, Uwe Braun, Susumu Takamatsu, Ralph Panstruga, Levente Kiss, Levente Kiss, Levente Kiss   +10 more
doaj   +1 more source