Results 41 to 50 of about 30,876 (211)

Metagenomic reconstruction of key anaerobic digestion pathways in municipal sludge and industrial wastewater biogas-producing systems

Frontiers in Microbiology, 2016
Anaerobic digestion (AD) is a microbial process widely used to treat organic wastes. While the microbes involved in digestion of municipal sludge are increasingly well characterized, the taxonomic and functional compositions of AD digesters treating ...
Mingwei eCai, David eWilkins, Jiapeng eChen, Siu Kin eNg, Hongyuan eLu, Yangyang eJia, Patrick KH Lee   +6 more
doaj   +1 more source

Scoring Species for Synthetic Community Design: Network Analyses of Functional Core Microbiomes

Frontiers in Microbiology, 2020
Constructing biological communities is a major challenge in both basic and applied sciences. Although model synthetic communities with a few species have been constructed, designing systems consisting of tens or hundreds of species remains one of the ...
Hirokazu Toju, Hirokazu Toju, Masato S. Abe, Chiharu Ishii, Yoshie Hori, Hiroaki Fujita, Shinji Fukuda, Shinji Fukuda, Shinji Fukuda   +8 more
doaj   +1 more source

A Bioinformatician's Guide to Metagenomics [PDF]

Microbiology and Molecular Biology Reviews, 2008
SUMMARYAs random shotgun metagenomic projects proliferate and become the dominant source of publicly available sequence data, procedures for the best practices in their execution and analysis become increasingly important. Based on our experience at the Joint Genome Institute, we describe the chain of decisions accompanying a metagenomic project from ...
Kunin, V., Copeland, A., Lapidus, A., Mavromatis, K., Hugenholtz, P.   +4 more
openaire   +5 more sources

Contrasting Winter Versus Summer Microbial Communities and Metabolic Functions in a Permafrost Thaw Lake

Frontiers in Microbiology, 2019
Permafrost thawing results in the formation of thermokarst lakes, which are biogeochemical hotspots in northern landscapes and strong emitters of greenhouse gasses to the atmosphere.
Adrien Vigneron, Adrien Vigneron, Adrien Vigneron, Connie Lovejoy, Connie Lovejoy, Connie Lovejoy, Connie Lovejoy, Perrine Cruaud, Perrine Cruaud, Dimitri Kalenitchenko, Dimitri Kalenitchenko, Dimitri Kalenitchenko, Alexander Culley, Alexander Culley, Alexander Culley, Warwick F. Vincent, Warwick F. Vincent, Warwick F. Vincent   +17 more
doaj   +1 more source

Significantly enriched KEGG pathways in the MC metagenomes relative to the CT metagenomes, based on odds ratios (OR) calculated between the copy number of putative gene sequences in the MC and CT metagenomes.

, 2013
Significantly enriched KEGG pathways in the MC metagenomes relative to the CT metagenomes, based on odds ratios (OR) calculated between the copy number of putative gene sequences in the MC and CT metagenomes.
Shulei Sun (354595), Xiaozhen Mou (406526), Robert Heath (406529), Jisha Jacob (406528), Xinxin Lu (406527)   +4 more
core   +1 more source

genomes from metagenomes pdf

, 2019
genomes from metagenomes pdf from astrobiomike.github ...
Mike Lee (4372780)
core   +1 more source

genomes from metagenomes ppt slide

, 2018
genomes from metagenomes ppt ...
Mike Lee (4372780)
core   +1 more source

Optimizing de novo genome assembly from PCR-amplified metagenomes [PDF]

, 2018
Background Metagenomics has transformed our understanding of microbial diversity across ecosystems, with recent advances enabling de novo assembly of genomes from metagenomes.
Virginia I. Rich, Gareth Trubl, Estelle Couradeau, Trent R. Northen, Eloe-Fadrosh, Emiley, Emiley A. Eloe-Fadrosh, Zhan, Yuanchao, Rex R. Malmstrom, Fuhrman, Jed A., Malmstrom, Rex, Eloe-Fadrosh, Emiley A., Feng Chen, Nath, Nandita, Northen, Trent R, Fuhrman, Jed A, Rich, Virginia I., Sullivan, Matthew B, David Marsan, Sullivan, Matthew B., Matthew B. Sullivan, Ahlgren, Nathan A, Fuhrman, Jed, Couradeau, Estelle, Malmstrom, Rex R, Yuanchao Zhan, Marsan, David, Ahlgren, Nathan A., Ahlgren, Nathan, Sullivan, Matthew, Jed A. Fuhrman, Northen, Trent R., Northen, Trent, Nandita Nath, Nathan A. Ahlgren, Eloe-Fadrosh, Emiley A, Simon Roux, Danielle Goudeau, Chen, Feng, Rich, Virginia I, Goudeau, Danielle, Rich, Virginia, Malmstrom, Rex R., Trubl, Gareth, Roux, Simon   +43 more
core   +2 more sources

Microbial C and N Metabolism Alterations Based on Soil Metagenome and Different Shrub Invasion Stages in Sanjiang Plain Wetlands

Microorganisms
Shrub invasion affects plant growth and soil physicochemical properties, resulting in soil microbiota metabolic pathway changes. However, little is known about the shrub expansion intensity of microbial metabolic pathway processes. In this study, we used
Rongtao Zhang, Shenzheng Wang, Haixiu Zhong, Xiaoyu Fu, Lin Li, Li Wang, Yingnan Liu   +6 more
doaj   +1 more source

Resurrection of a global, metagenomically defined gokushovirus

eLife, 2020
Gokushoviruses are single-stranded, circular DNA bacteriophages found in metagenomic datasets from diverse ecosystems worldwide, including human gut microbiomes.
Paul C Kirchberger, Howard Ochman
doaj   +1 more source