Results 31 to 40 of about 30,876 (211)

Data Pack for DGRs in metagenomes exercise

, 2021
An anvi'o data pack used here to study Trichodesmium DGRs in marine metagenomes:https://merenlab.org/data/dgrs-in-metagenomes/
A. Murat Eren (696829)
core   +1 more source

Viral metagenomics [PDF]

Reviews in Medical Virology, 2007
AbstractCharacterisation of new viruses is often hindered by difficulties in amplifying them in cell culture, limited antigenic/serological cross‐reactivity or the lack of nucleic acid hybridisation to known viral sequences. Numerous molecular methods have been used to genetically characterise new viruses without prior in vitro replication or the use ...
openaire   +2 more sources

Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software [PDF]

Nature Methods, 2017
Report on an extensive metagenome benchmark data sets fromnewly sequenced genomes of ~700 microbial isolates and 600circular elements that were distinct from strains, species, generaor orders represented by public genomes during the CAMI ...
Sczyrba, Alexander, Hofmann, Peter, Belmann, Peter, Koslicki, David, Janssen, Stefan, Dröge, Johannes, Gregor, Ivan, Majda, Stephan, Fiedler, Jessika, Dahms, Eik, Bremges, Andreas, Fritz, Adrian, Garrido-Oter, Ruben, Jørgensen, Tue Sparholt, Shapiro, Nicole, Blood, Philip D, Gurevich, Alexey, Bai, Yang, Turaev, Dmitrij, DeMaere, Matthew Z, Chikhi, Rayan, Nagarajan, Niranjan, Quince, Christopher, Meyer, Fernando, Balvočiūtė, Monika, Hansen, Lars Hestbjerg, Sørensen, Søren J, Chia, Burton K H, Denis, Bertrand, Froula, Jeff L, Wang, Zhong, Egan, Robert, Don Kang, Dongwan, Cook, Jeffrey J, Deltel, Charles, Beckstette, Michael, Lemaitre, Claire, Peterlongo, Pierre, Rizk, Guillaume, Lavenier, Dominique, Wu, Yu-Wei, Singer, Steven W, Jain, Chirag, Strous, Marc, Klingenberg, Heiner, Meinicke, Peter, Barton, Michael D, Lingner, Thomas, Lin, Hsin-Hung, Liao, Yu-Chieh, Silva, Genivaldo Gueiros Z, Cuevas, Daniel A, Edwards, Robert A, Saha, Surya, Piro, Vitor C, Renard, Bernhard Y, Pop, Mihai, Klenk, Hans-Peter, Göker, Markus, Kyrpides, Nikos C, Woyke, Tanja, Vorholt, Julia A, Schulze-Lefert, Paul, Rubin, Edward M, Darling, Aaron E, Rattei, Thomas, McHardy, Alice C   +66 more
openaire   +10 more sources

Genomic Insights into Adaptations of Trimethylamine-Utilizing Methanogens to Diverse Habitats, Including the Human Gut

mSystems, 2021
Archaea of the order Methanomassiliicoccales use methylated amines such as trimethylamine as the substrates for methanogenesis. They form two large phylogenetic clades and reside in diverse environments, from soil to the human gut.
Jacobo de la Cuesta-Zuluaga, Tim D. Spector, Nicholas D. Youngblut, Ruth E. Ley   +3 more
doaj   +1 more source

crAssphage across healthy gut metagenomes

, 2023
The anvi'o contigs-db and profile-db files in this folder represent the metagenomic read recruitment results from 4,515 global gut metagenomes from healthy individuals using the crAssphage genome.
A. Murat Eren (696829)
core   +1 more source

Integrated Metagenomic and LC–MS/MS Analysis Reveals the Biogenic Amine-Producing Strains of Two Typical Chinese Traditional Fish Products: Fermented Mandarin Fish (Siniperca chuatsi) and Semi-Dried Yellow Croaker (Larimichthys crocea)

Foods
Two typical fish products—fermented mandarin fish and semi-dried yellow croaker—are associated with biogenic amines (BAs), which are harmful to human health.
Xuan Zhang, Hai Chi, Di Peng, Mei Jiang, Cuihua Wang, Haiyan Zhang, Wei Kang, Lei Li   +7 more
doaj   +1 more source

Microbial Community Structure and Functional Potential Along a Hypersaline Gradient

Frontiers in Microbiology, 2018
Salinity is one of the strongest environmental drivers of microbial evolution and community composition. Here we aimed to determine the impact of salt concentrations (2.5, 7.5, and 33.2%) on the microbial community structure of reclaimed saltern ponds ...
Jeffrey A. Kimbrel, Jeffrey A. Kimbrel, Nicholas Ballor, Nicholas Ballor, Yu-Wei Wu, Yu-Wei Wu, Maude M. David, Terry C. Hazen, Terry C. Hazen, Blake A. Simmons, Blake A. Simmons, Steven W. Singer, Steven W. Singer, Janet K. Jansson, Janet K. Jansson   +14 more
doaj   +1 more source

Exploration of noncoding sequences in metagenomes. [PDF]

, 2013
Environment-dependent genomic features have been defined for different metagenomes, whose genes and their associated processes are related to specific environments.
María M Zambrano, Adrián C. Rodríguez (394080), Pedro A Moreno, Fabián Tobar-Tosse, Patricia E Vélez, María M. Zambrano (394082), Fabián Tobar-Tosse (394079), Pedro A. Moreno (394083), Adrián C Rodríguez, Patricia E. Vélez (394081), Vélez Patricia E., Rodríguez Adrián C., Tobar-Tosse Fabián, Zambrano María M., Moreno Pedro A.   +14 more
core   +1 more source

The distribution variation of pathogens and virulence factors in different geographical populations of giant pandas

Frontiers in Microbiology, 2023
Intestinal diseases caused by opportunistic pathogens seriously threaten the health and survival of giant pandas. However, our understanding of gut pathogens in different populations of giant pandas, especially in the wild populations, is still limited ...
Mengyu Zhao, Mengyu Zhao, Yuxia Li, Wei Wei, Wei Wei, Zejun Zhang, Zejun Zhang, Hong Zhou, Hong Zhou   +8 more
doaj   +1 more source

Characteristics of metagenomes.

, 2013
Characteristics of metagenomes.
David A. Lipson (417142), Archana Srinivas (417144), Shashank Sathe (417146), John Matthew Haggerty (417143), Theodore K. Raab (417145), Elizabeth A. Dinsdale (41622)   +5 more
core   +1 more source