Results 171 to 180 of about 140,210 (264)

Meta-CD: a metagenomic sequencing coverage and depth calculator for target species. [PDF]

Microbiol Resour Announc
Claiborne C, Lyu Z.
europepmc   +1 more source

Sequence‐identical microbial genomes with disparate taxonomy: A large‐scale redundancy analysis in NCBI genome database

iMetaOmics, EarlyView.
Public microbial genome repositories (such as NCBI) contain thousands of sequence‐identical genome assemblies assigned to different taxonomic lineages, potentially inflating microbial diversity and introducing bias into comparative genomics, metagenomics, and pathogen surveillance.
Niharika Saraf, Gaurav Sharma
wiley   +1 more source

Emerging and Novel Ovine Viruses: Molecular Diagnostics, Genomic and Metagenomic Surveillance, and One Health Perspectives. [PDF]

Animals (Basel)
Shahbaz GM, Ashraf Z, Chen S, Wang C, He C, Sun H, Zhu L, Liu L, Wang M, Wu L, Gu R, Li W, Xing F.   +12 more
europepmc   +1 more source

Multi‐omics reveals gastrointestinal metabolic disorder‐induced diarrhea in postpartum dairy cows

iMetaOmics, EarlyView.
Nutritional diarrhea is a pervasive, costly challenge in dairy production. Using integrated metagenomic and metabolomic profiling, we identified coordinated microbial and metabolic alterations across the rumen, hindgut, and serum. In the rumen, enrichment of Prevotella sp.
Weixuan Tang, Yangyi Hao, Jiawei Zhang, Yajing Wang, Zhijun Cao, Hongjian Yang, Wei Wang, Shengli Li   +7 more
wiley   +1 more source

Metagenomic and culture‐based insights into host and plasmid contexts of high‐risk ARGs in poultry farm environments

iMetaOmics, EarlyView.
Shotgun metagenomics and culture‐based isolate genomics revealed position‐associated high‐risk antibiotic resistance genes (ARGs) signals across poultry manure piles and surrounding soils. Culture‐confirmed Enterobacteriaceae and IncHI2A‐related blaNDM‐5 plasmid backgrounds further highlight priority host‐ARG‐plasmid contexts for farm antimicrobial ...
Yaling Wang, Lianwei Ye, Linan He, Zhenlong Wu, Yiwen Yang, Sheng Chen   +5 more
wiley   +1 more source

Bacterial metagenome in plaque, saliva, and tumor samples from individuals with and without OSCC by next-generation sequencing. [PDF]

GigaByte
Erira A, Robayo DAG, Gamboa FO, Chala Galindo AI, Moreno Torres A, Arregui AC, Muñoz E, Noguera Polania JF, Tosse FT.   +8 more
europepmc   +1 more source

Benchmarking gut microbiome indices within and across populations

iMetaOmics, EarlyView.
We compared 10 widely used gut microbiome indices in 12,561 American Gut Project participants and 10 external cohorts, testing how well each distinguished people with healthy lifestyles, responded to 79 environmental factors, and associated with 14 chronic conditions. No single index performed best on all three tasks.
Yu Sun, Yuwei Tang, Jieying Ou, Xinghan Wang, Yiwen Yuan, Xi Fu, Yiqun Deng   +6 more
wiley   +1 more source

Metagenomic next-generation sequencing of bronchoalveolar lavage fluid unravels brucellosis in a patient with chronic lung disease and venous thrombosis: A case report. [PDF]

IDCases
Aji N, Balati T, Yang Z, Jia B.
europepmc   +1 more source

Underrecognized Q fever and rickettsial diseases across China

iMetaOmics, EarlyView.
Q fever and rickettsial diseases are underrecognized causes of fever of unknown origin in China, with Coxiella burnetii and Orientia tsutsugamushi predominating. We identify Rickettsia bellii‐like sequences in human clinical specimens and highlight unexpected pediatric detections that warrant further investigation of possible exposure patterns ...
Tian Qin, Zhongqiu Teng, Yamin Sun, Yaoming Liang, Junrong Liang, Ronghua Jin, Jianguo Xu   +6 more
wiley   +1 more source

Exploring the Oral Resistome: From Metagenomics to Precision Oral Health. [PDF]

Microorganisms
Correia LN, Correia A, Bessa LJ.
europepmc   +1 more source