Results 41 to 50 of about 133,465 (266)

Functional metagenomic analysis reveals rivers are a reservoir for diverse antibiotic resistance genes [PDF]

, 2014
The environment harbours a significant diversity of uncultured bacteria and a potential source of novel and extant resistance genes which may recombine with clinically important bacteria disseminated into environmental reservoirs.
Hawkey, PM, Zhang, Lihong, Wellington, E M, Wellington, EM, Gaze, W.H., Gaze, WH, Amos, G C A, Gaze, William H., Hawkey, Peter, Hawkey, P. M., Amos, GCA, Wellington, E.M., Hawkey, P.M., Hawkey, P M, Amos, G.C.A., Zhang, L., Zhang, L, Wellington, E. M. H., Amos, Gregory C. A., Gaze, W H   +19 more
core   +1 more source

Metagenomic Subspecies (mgSs) Classifier

, 2022
This RDS file contains the random forest classifers for all metagenomic subspecies used in subsequent classification of metagenomic community state types (mgCSTs) for vaginal metagenomes. 
Johanna Holm (6744524)
core   +1 more source

Genomic and Metagenomic Insights Into the Microbial Community in the Regenerating Intestine of the Sea Cucumber Apostichopus japonicus

Frontiers in Microbiology, 2019
Host-intestine microbiota interactions have been widely studied in aquatic animals, but these interactions in the intestine regeneration process of the sea cucumber Apostichopus japonicus have been rarely investigated.
Hongxia Zhang, Hongxia Zhang, Hongxia Zhang, Qing Wang, Qing Wang, Shilin Liu, Shilin Liu, Shilin Liu, Da Huo, Da Huo, Da Huo, Da Huo, Jianmin Zhao, Jianmin Zhao, Libin Zhang, Libin Zhang, Libin Zhang, Libin Zhang, Ye Zhao, Lina Sun, Lina Sun, Lina Sun, Lina Sun, Hongsheng Yang, Hongsheng Yang, Hongsheng Yang, Hongsheng Yang   +26 more
doaj   +1 more source

Comparison of gut microflora of donkeys in high and low altitude areas

Frontiers in Microbiology, 2022
Donkeys’ gut microbe is critical for their health and adaptation to the environment. Little research has been conducted on the donkey gut microbiome compared with other domestic animals. The Tibetan Plateau is an extreme environment.
Rong Guo, Shuer Zhang, Jianxing Chen, Wei Shen, Wei Shen, Guoliang Zhang, Guoliang Zhang, Junjie Wang, Junjie Wang, Fali Zhang, Fali Zhang, Qingjie Pan, Taifeng Xie, Deqiang Ai, Jianbao Dong, Jiajia Suo, Yujiang Sun, Yujiang Sun, Yujiang Sun, Shuqin Liu, Shuqin Liu   +20 more
doaj   +1 more source

Improving metagenomic classification by boosting reference k-mers [PDF]

, 2022
In this thesis a solution is developed to the problem of improving the metagenomic classification trying to boosting the reference k-mers. The purpose of this report is to understand if increasing the information available to the classifier help ...
Storato, Davide
core  

Host IP3R channels are dispensable for rotavirus Ca2+ signaling but critical for intercellular Ca2+ waves that prime uninfected cells for rapid virus spread

mBio
Rotavirus is a leading cause of viral gastroenteritis. A hallmark of rotavirus infection is increased cytosolic Ca2+ caused by nonstructural protein 4 (NSP4).
Jacob L. Perry, Francesca J. Scribano, John T. Gebert, Kristen A. Engevik, Jenna M. Ellis, Joseph M. Hyser   +5 more
doaj   +1 more source

Metagenomics Reveals the Microbial Community Responsible for Producing Biogenic Amines During Mustard [Brassica juncea (L.)] Fermentation

Frontiers in Microbiology, 2022
Biogenic amines (BAs) are considered potential hazards produced during fermented food processing, and the production of BAs is closely related to microbial metabolism. In this work, the changes of BA content were analyzed during mustard fermentation, and
Yangyang Yu, Yangyang Yu, Lu Li, Yujuan Xu, Hong Li, Yuanshan Yu, Zhenlin Xu   +6 more
doaj   +1 more source

Tales from the crypt and coral reef: the successes and challenges of identifying new herpesviruses using metagenomics. [PDF]

, 2015
Herpesviruses are ubiquitous double-stranded DNA viruses infecting many animals, with the capacity to cause disease in both immunocompetent and immunocompromised hosts.
Charlotte J. Houldcroft, Houldcroft, CJ, Breuer, J, Judith Breuer   +3 more
core   +2 more sources

Bacillus sp. strain D5 based bioformulation enhances growth, yield and quality of Allium sativum L. under field conditions

Discover Plants
Bacillus sp. strain D5 (Bar D5), a well-characterized plant growth promoting bacterium (PGPB) previously demonstrated to improve quality and yield of Crocus sativus L. (saffron), was evaluated for its efficacy in Allium sativum L. (garlic).
Nancy Bhagat, Ayushi Verma, Aakanksha Yadav, Jyoti Vakhlu   +3 more
doaj   +1 more source

Metagenomic and metabolomic analyses show correlations between intestinal microbiome diversity and microbiome metabolites in ob/ob and ApoE−/− mice

Frontiers in Nutrition, 2022
Obesity and atherosclerosis are the most prevalent metabolic diseases. ApoE−/− and ob/ob mice are widely used as models to study the pathogenesis of these diseases.
Sashuang Dong, Sashuang Dong, Sashuang Dong, Chengwei Wu, Wencan He, Ruimin Zhong, Jing Deng, Ye Tao, Furong Zha, Zhenlin Liao, Xiang Fang, Hong Wei   +11 more
doaj   +1 more source