Results 71 to 80 of about 173,789 (325)

Single-cell genomics based on Raman sorting reveals novel carotenoid-containing bacteria in the Red Sea [PDF]

, 2016
Cell sorting coupled with single-cell genomics is a powerful tool to circumvent cultivation of microorganisms and reveal microbial ‘dark matter’. Single-cell Raman spectra (SCRSs) are label-free biochemical ‘fingerprints’ of individual cells, which can ...
Davison, Paul A., Frentrup, Martinique, Huang, Wei E., Hunter, C. Neil, Kaster, Anne-Kristin, Murrell, J. Colin, Preston, Gail M., Song, Yanqing, Song, Yizhi, Thompson, Ian P., Vollmers, John, Yin, Huabing   +11 more
core   +4 more sources

Harnessing Next‐Generation 3D Cancer Models to Elucidate Tumor‐Microbiome Crosstalk

Advanced Healthcare Materials, EarlyView.
Centralizes the microbiome within 3D tumor‐microbiome model platforms, including spheroids, organoids, 3D‐bioprinted constructs, and microfluidic chips, each enabling structured host‐tumor‐microbe studies. These systems support bacterial colonization, facilitating investigation of microbial impacts on tumor growth, immunity, and therapy. The microbiome
Marina Green Buzhor, Giuseppe Longobardi, Or Kandli, Anne Krinsky, Opal Avramoff, Anshika Katyal, Koren Salomon, Adan Miari, Dana Venkert, Tania T. Barnatan, América García Alvarado, Shahar Greenberg, Ronit Satchi‐Fainaro   +12 more
wiley   +1 more source

subMG automates data submission for metagenomics studies

BioData Mining
Background Publicly available metagenomics datasets are crucial for ensuring the reproducibility of scientific findings and supporting contemporary large-scale studies.
Tom Tubbesing, Andreas Schlüter, Alexander Sczyrba   +2 more
doaj   +1 more source

IL17eScan: A Tool for the Identification of Peptides Inducing IL-17 Response

Frontiers in Immunology, 2017
IL-17 cytokines are pro-inflammatory cytokines and are crucial in host defense against various microbes. Induction of these cytokines by microbial antigens has been investigated in the case of ischemic brain injury, gingivitis, candidiasis, autoimmune ...
Sudheer Gupta, Parul Mittal, Midhun K. Madhu, Vineet K. Sharma   +3 more
doaj   +1 more source

High‐Throughput Metagenomics for Identification of Pathogens in the Clinical Settings

Small Methods, 2020
The application of sequencing technology is shifting from research to clinical laboratories owing to rapid technological developments and substantially reduced costs.
Na Li, Q. Cai, Qing Miao, Zeshi Song, Yuan Fang, Bijie Hu   +5 more
semanticscholar   +1 more source

Steps in Metagenomics: Let’s Avoid Garbage in and Garbage Out [PDF]

, 2015
Is metagenomics a revolution or a new fad? Metagenomics is tightly associated with the availability of next-generation sequencing in all its implementations.
Izard, Jacques
core   +1 more source

Extreme Scale De Novo Metagenome Assembly [PDF]

, 2018
Metagenome assembly is the process of transforming a set of short, overlapping, and potentially erroneous DNA segments from environmental samples into the accurate representation of the underlying microbiomes's genomes. State-of-the-art tools require big
Arndt, Bill, Buluc, Aydin, Egan, Rob, Georganas, Evangelos, Goltsman, Eugene, Hofmeyr, Steven, Oliker, Leonid, Tritt, Andrew, Yelick, Katherine   +8 more
core   +3 more sources

Smart Sampling Capsule for Capture and Detection of Enteric Pathogens in the Small Intestine

Advanced Materials Technologies, EarlyView.
An ingestible smart sampling capsule for capturing asymptomatic enteric pathogens at their primary sites of interaction within the small intestine. This capability enables non‐invasive detection of early pathogen colonization within the gut environment prior to fecal shedding, providing a robust approach for pathogen surveillance and microbiome studies.
Akshay Krishnakumar, Devendra Sarnaik, Nicholas L. F. Gallina, Robyn R. McCain, Christa Crain, Arun K. Bhunia, Rahim Rahimi   +6 more
wiley   +1 more source

A study of innate immune kinetics reveals a role for a chloride transporter in a virulent Francisella tularensis type B strain

MicrobiologyOpen, 2021
Tularemia is a zoonotic disease of global proportions. Francisella tularensis subspecies tularensis (type A) and holarctica (type B) cause disease in healthy humans, with type A infections resulting in higher mortality.
Lisa M. Matz, Joseph F. Petrosino
doaj   +1 more source

Shotgun metagenomic sequencing analysis of ocular surface microbiome in Singapore residents with mild dry eye [PDF]

, 2022
Louis Tong, Florentin Constancias, Aihua Hou, Song Lin Chua, Daniela I. Drautz‐Moses, Stephan C. Schuster, Liang Yang, Rohan B. H. Williams, Staffan Kjelleberg   +8 more
openalex   +1 more source