Results 81 to 90 of about 178,547 (361)

High‐Throughput Metagenomics for Identification of Pathogens in the Clinical Settings

Small Methods, 2020
The application of sequencing technology is shifting from research to clinical laboratories owing to rapid technological developments and substantially reduced costs.
Na Li, Q. Cai, Qing Miao, Zeshi Song, Yuan Fang, Bijie Hu   +5 more
semanticscholar   +1 more source

Recovery of strain-resolved genomes from human microbiome through an integration framework of single-cell genomics and metagenomics

Microbiome, 2021
Obtaining high-quality (HQ) reference genomes from microbial communities is crucial for understanding the phylogeny and function of uncultured microbes in complex microbial ecosystems.
Koji Arikawa, Keigo Ide, M. Kogawa, Tatsuya Saeki, Takuya Yoda, Taruho Endoh, Ayumi Matsuhashi, H. Takeyama, Masahito Hosokawa   +8 more
semanticscholar   +1 more source

2‐line Ferrihydrite Enhance Microbial Synthesis of Plant Biostimulants in Composted Biosolid by Regulating Phyla Pseudomonadota and Actinomycetota

Advanced Science, EarlyView.
This study explores how iron and manganese oxides transform sewage sludge into plant biostimulants during composting. Non‐targeted identification reveals the main species of plant biostimulants. Metagenomic analysis reveals that 2‐line ferrihydrite specifically enriches microbial genes for biosynthesis, boosting plant‐growth promoters.
Yu Zhang, Ziwei Zhang, Zexu Chen, Boyuan Yang, Siying Cai, Jun Chen, Jianhua Guo, Weijun Zhang   +7 more
wiley   +1 more source

Metagenomics [PDF]

Nature Biotechnology, 2019
Gaurav Saxena, Narendra Kumar, Nandkishor More, Ram Naresh Bharagava   +3 more
  +6 more sources

A study of innate immune kinetics reveals a role for a chloride transporter in a virulent Francisella tularensis type B strain

MicrobiologyOpen, 2021
Tularemia is a zoonotic disease of global proportions. Francisella tularensis subspecies tularensis (type A) and holarctica (type B) cause disease in healthy humans, with type A infections resulting in higher mortality.
Lisa M. Matz, Joseph F. Petrosino
doaj   +1 more source

Extreme Scale De Novo Metagenome Assembly [PDF]

, 2018
Metagenome assembly is the process of transforming a set of short, overlapping, and potentially erroneous DNA segments from environmental samples into the accurate representation of the underlying microbiomes's genomes. State-of-the-art tools require big
Arndt, Bill, Buluc, Aydin, Egan, Rob, Georganas, Evangelos, Goltsman, Eugene, Hofmeyr, Steven, Oliker, Leonid, Tritt, Andrew, Yelick, Katherine   +8 more
core   +3 more sources

Consensus statement: Virus taxonomy in the age of metagenomics

Nature Reviews Microbiology, 2017
The number and diversity of viral sequences that are identified in metagenomic data far exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of experts discussed the proposal that, with appropriate quality control ...
P. Simmonds, M. Adams, M. Benkő, M. Breitbart, J. R. Brister, E. Carstens, A. Davison, E. Delwart, A. Gorbalenya, B. Harrach, R. Hull, A. King, E. Koonin, M. Krupovic, J. Kuhn, E. Lefkowitz, M. Nibert, R. Orton, M. Roossinck, S. Sabanadzovic, M. Sullivan, C. Suttle, R. Tesh, R. Vlugt, A. Varsani, F. Zerbini   +25 more
semanticscholar   +1 more source

Metagenomics Approaches for Improving Food Safety.

Journal of Food Protection, 2021
Advancements in next-generation sequencing technology have dramatically reduced the cost and increased the ease of microbial whole-genome sequencing. This is revolutionizing the identification and analysis of foodborne microbial pathogens, facilitating ...
C. Billington, J. Kingsbury, L. Rivas
semanticscholar   +1 more source

Ratoon Season Rice Reduces Methane Emissions by Limiting Acetic Acid Transport to the Rhizosphere and Inhibiting Methanogens

Advanced Science, EarlyView.
This study finds that the interaction between ABA‐OsCIPK2‐OsSWEET1A reduces the allocation of methane producing bacteria carbon source (acetic acid) content to the rhizosphere soil of ratoon season rice, thereby reducing methane emissions. Abstract Rice paddies are a major, persistent source of atmospheric methane (CH4), emission rates depend on the ...
Jingnan Zou, Hailong Xu, Bin Qin, Chaojie Lan, Jinying Li, Bianhong Zhang, Huabin Zhang, Chunlin Guo, Hongfei Chen, Zhongming Fang, Quanzhi Zhao, Wenfei Wang, Changxun Fang, Zhixing Zhang, Wenxiong Lin   +14 more
wiley   +1 more source

The Gene Catalog and Comparative Analysis of Gut Microbiome of Big Cats Provide New Insights on Panthera Species

Frontiers in Microbiology, 2020
Majority of metagenomic studies in the last decade have focused on revealing the gut microbiomes of humans, rodents, and ruminants; however, the gut microbiome and genic information (gene catalog) of large felids such as Panthera species are largely ...
Parul Mittal, Rituja Saxena, Atul Gupta, Shruti Mahajan, Vineet K. Sharma   +4 more
doaj   +1 more source