Results 111 to 120 of about 5,063 (236)
A priori estimation of sequencing effort in complex microbial metatranscriptomes
Ecology and Evolution, 2020 Metatranscriptome analysis or the analysis of the expression profiles of whole microbial communities has the additional challenge of dealing with a complex system with dozens of different organisms expressing genes simultaneously. An underlying issue for
T. Monleón-Getino, J. Frias-Lopez
semanticscholar +1 more source
Problems With GO Enrichment as an Endpoint for Ecological Omics Interpretation
Molecular Ecology, Volume 35, Issue 19, October 2026.ABSTRACT Gene Ontology (GO) enrichment analysis has been widely adopted for interpretating omics data, including in ecological research. Although valuable for summarizing large gene lists into functional categories, it is often treated as the final interpretive step.
Ehsan Pashay Ahi +2 more
wiley +1 more source
Insight Into the Molecular Mechanisms for Microcystin Biodegradation in Lake Erie and Lake Taihu
Frontiers in Microbiology, 2019 Microcystins are potent hepatotoxins that are frequently detected in fresh water lakes plagued by toxic cyanobacteria. Microbial biodegradation has been referred to as the most important avenue for removal of microcystin from aquatic environments.
Lauren E. Krausfeldt +5 more
doaj +1 more source
Low abundance of Archaeorhizomycetes among fungi in soil metatranscriptomes
, 2020 The abundance of Archaeorhizomycetes, a recently discovered fungal lineage, in soil fungal communities is disputed. Majority of the estimates is based on techniques involving polymerase chain reaction (PCR), which might be source of bias.
CHOMA, Michal
core
, 2019 This dataset contains key characteristics about the data described in the Data Descriptor Metagenomes and metatranscriptomes from boreal potential and actual acid sulfate soil materials. Contents: 1. human readable
Brian Foster (3285234) +22 more
core +1 more source
, 2022 Additional file 7: Table S4. The number of Transcription Factors (TFs) per TF family mapped to each of the 11 metatranscriptomes of reference from the same bioreactor where the metagenome (accession number PRJNA511011, NCBI) used to predict the putative ...
Rodolfo Brizola Toscan (12063430) +5 more
core +1 more source
New Phytologist, Volume 252, Issue 1, Page 400-413, October 2026.Share of transcripts and ITS2 sequence for each gene families among identified fungal contigs and OTUs. Summary Boreal forest ecosystems constitute a large terrestrial reservoir of carbon. In these nitrogen‐limited environments, release of nutrients through decomposition of soil organic matter is of fundamental importance.
Florian Barbi +4 more
wiley +1 more source
Advanced Science, Volume 13, Issue 50, 7 September 2026.A three‐tier livestock multi‐omics framework resolves four typical analytical pitfalls. Moving from statistical association through machine learning preprocessing to triple‐modal causal inference, it converts omics results into genomic selection and gene editing strategies to achieve One Health, underpinned by multi‐omics data, multimodal sequencing ...
Jiying Wen +5 more
wiley +1 more source
, 2017 These six files represent the original de-novo transcriptome assemblies obtained using Trinity software v2.0.6. Files Cym_Euk_184053.fasta, Sco_Euk_103013.fasta, Ted_Euk_129529.fasta are the eukaryotic transcriptomes for Cymbastella concentrica ...
Moitinho-Silva, Lucas +9 more
core +1 more source
Food Bioengineering, Volume 5, Issue 3, Page 342-358, September 2026.Metabolic shifts from growth to stress adaptation in Shanxi aged vinegar fermentation link flavor maturation and microbial cooperation, and Lactobacillus and Acetobacter form a self‐organizing metabolic network through division of labor. ABSTRACT Acetic acid fermentation (AAF) is a vital stage in the production of Shanxi aged vinegar (SAV), during ...
Yanfang Wu +6 more
wiley +1 more source