Results 121 to 130 of about 5,063 (236)

Foundation Models for Microbiome Research: From Sequence Semantics to Community Dynamics and Multimodal World Models

Advanced Genetics, Volume 7, Issue 3, September 2026.
Microbiome foundation models are framed as a multiscale route from sequence semantics to community ecology, multimodal alignment and future world models. By learning transferable representations across cohorts, habitats and perturbations, this roadmap highlights how microbiome AI can move beyond association‐driven analysis toward interpretable ...
Haohong Zhang, Zixin Kang, Kang Ning
wiley   +1 more source

Soil Metatranscriptomes Under Long-Term Experimental Warming and Drying: Fungi Allocate Resources to Cell Metabolic Maintenance Rather Than Decay

Frontiers in Microbiology, 2019
Earth’s temperature is rising, and with this increase, fungal communities are responding and affecting soil carbon processes. At a long-term soil-warming experiment in a boreal forest in interior Alaska, warming and warming-associated drying alters the ...
A. Romero‐Olivares, Germán Meléndrez-Carballo, A. Lago-Lestón, K. Treseder   +3 more
semanticscholar   +1 more source

Does nutrient scarcity select for Synechococcus clade III in the Mediterranean Sea?

Limnology and Oceanography Letters, Volume 11, Issue 5, September 2026.
Abstract Synechococcus inhabit both nutrient‐rich estuaries and oligotrophic waters, yet exhibit distinct niche segregation across phylogenetic clades. Previous studies indicated clade III predominated in the ultraoligotrophic Mediterranean Sea. However, the mechanisms underlying clade III's dominance over other clades in ultraoligotrophic waters ...
Xiaodong Zhang, Shunyan Cheung, Hoi Yau Chan, Sangwook Scott Lee, Ioulia Santi, Paraskevi Pitta, Jiawei Chen, Hongbin Liu   +7 more
wiley   +1 more source

Novel RNA viruses associated with avian haemosporidian parasites.

PLoS ONE, 2022
Avian haemosporidian parasites can cause malaria-like symptoms in their hosts and have been implicated in the demise of some bird species. The newly described Matryoshka RNA viruses (MaRNAV1 and MaRNAV2) infect haemosporidian parasites that in turn ...
Jose Roberto Rodrigues, Scott W Roy, Ravinder N M Sehgal   +2 more
doaj   +1 more source

Diversity of the Microbiomes in the Larval and Adult Stages of the European Cherry Fruit Fly (Rhagoletis cerasi) and Identification of Potential Biocontrol Candidate Taxa

Entomologia Experimentalis et Applicata, Volume 174, Issue 9, Page 999-1010, September 2026.
First comprehensive characterization of the R. cerasi microbiome is reported. Stage‐specific variations in microbial composition are documented. Multiple bacterial entomopathogen taxa are identified as potential biocontrol candidates for R. cerasi.
Mahdi N. Al‐Shammaa, Saber Delpasand Khabbazi, Remziye Nalcacioglu, Ismail Demir, Durdane Yanar, Zihni Demirbag   +5 more
wiley   +1 more source

Wekemo Bioincloud 2026: An AI‐enabled platform for standardized multi‐omics data analyses

iMeta, Volume 5, Issue 4, August 2026.
An AI‐powered multi‐omics cloud platform integrating 41 standardized workflows, 126 visualization tools, and full‐lifecycle research intelligence to enable accessible, reproducible, and end‐to‐end integrative multi‐omics analysis. Abstract The rapid expansion of multi‐omics data has created an increasing demand for accessible and reproducible platforms
Yunyun Gao, Guoxing Zhang, Chengrui Wang, Hao Xu, Zhanhui Yu, Shunyao Jiang, Yong‐Xin Liu   +6 more
wiley   +1 more source

Additional file 1: of Long-term soil metal exposure impaired temporal variation in microbial metatranscriptomes and enriched active phages

, 2018
Figure S1. Alpha-diversity analysis (richness and Shannon index) of 16S rRNA gene transcript amplicon profiles (cDNA) and metatranscriptomes in the three copper plots at different times (A13: August 2013; F14: February 2014; A14: August 2014). Figure S2.
Søren Sørensen (222728), Martin Hansen (668325), Anders Johansen (250544), Kristian Brandt (3518480), Samuel Jacquiod (487783), Inês Nunes (6085346), Anders Priemé (5923457), Asker Brejnrod (3465656), Peter Holm (6085352)   +8 more
core   +1 more source

Unraveling the lung metatranscriptome in HCT [PDF]

Blood, 2021
Alpana Waghmare, Sina A. Gharib
openaire   +2 more sources

Metatranscriptomics in the NGS Era

Transcriptomics: Open Access, 2013
Copyright: © 2014 Gorni C. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
openaire   +1 more source

Microbial DNA methylation links rumen transcriptional activity to methane emission divergence in dairy cows

iMeta, Volume 5, Issue 4, August 2026.
Genome‐resolved methylomics uncovers the first DNA methylation atlas of the dairy cow rumen microbiome. Microbial DNA methylation profiles diverge between low‐ and high‐ methane‐emitting dairy cows despite limited taxonomic differences. Differential methylation is linked to transcriptional variation in genes involved in carbon metabolism, hydrogen ...
Xinyue Zhang, Guirong Xu, Liwei Zhao, Ye Tao, Jiawei Zhang, Cameron E. F. Clark, Yangyi Hao, Zhijun Cao, Shengli Li, Wei Wang   +9 more
wiley   +1 more source