Results 11 to 20 of about 9,285 (257)
Comparison between metatranscriptomics and viral metagenomics, 16S, and host transcriptomics for comprehensive profiling of the respiratory microbiome and host response [PDF]
Frontiers in MicrobiologyIntroductionOmics-based studies focusing on a single kingdom, such as bacterial 16S gene sequencing, viral metagenomics, and human mRNA sequencing, are commonly used to explore the microbiome and its association with host responses.
Gregory Destras +17 more
doaj +2 more sources
Metatranscriptomics for Understanding the Microbiome in Food and Nutrition Science [PDF]
MetabolitesMicrobiome science has greatly expanded our understanding of the diverse composition and function of gut microorganisms over the past decades. With its rich microbial composition, the microbiome hosts numerous functionalities essential for metabolizing ...
Christina F. Butowski +3 more
doaj +2 more sources
Enhancing infectious intestinal disease diagnosis through metagenomic and metatranscriptomic sequencing of 1000 human diarrhoeal samples [PDF]
Genome MedicineBackground Current surveillance of diarrhoeal disease is hindered by limitations of traditional diagnostic approaches, which often fail to identify the causative organism, particularly for novel or hard-to-culture bacterial pathogens.
Edward Cunningham-Oakes +14 more
doaj +2 more sources
Gene finding in metatranscriptomic sequences [PDF]
BMC Bioinformatics, 2014 Metatranscriptomic sequencing is a highly sensitive bioassay of functional activity in a microbial community, providing complementary information to the metagenomic sequencing of the community. The acquisition of the metatranscriptomic sequences will enable us to refine the annotations of the metagenomes, and to study the gene activities and their ...
Wazim Ismail, Yuzhen Ye, Haixu Tang
openaire +2 more sources
SAMSA2: a standalone metatranscriptome analysis pipeline [PDF]
BMC Bioinformatics, 2017 Abstract Background Complex microbial communities are an area of rapid growth in biology. Metatranscriptomics allows one to investigate the gene activity in an environmental sample via high-throughput sequencing.
Westreich, Samuel T +4 more
openaire +5 more sources
Cyanobacterial Blooms Are Not a Result of Positive Selection by Freshwater Eutrophication
Microbiology Spectrum, 2022 Long-standing cyanobacterial harmful algal blooms (CyanoHABs) are known to result from synergistic interaction between elevated nutrients and superior ecophysiology of cyanobacteria.
Yang Yu +4 more
doaj +1 more source
, 2023 Relevant data and statistics related to metagenomics, MAGs, metatranscriptomics, ASVs, and process performance associated to the manuscript: "Metagenomics and Metatranscriptomics Suggest Pathways of 3-Chloroaniline Degradation in Wastewater Reactors" by ...
Florentin Constancias (5991288) +5 more
core +1 more source
Periodontology 2000, EarlyView., 2023 Abstract This narrative review summarizes the collective knowledge on periodontal microbiology, through a historical timeline that highlights the European contribution in the global field. The etiological concepts on periodontal disease culminate to the ecological plaque hypothesis and its dysbiosis‐centered interpretation.
Georgios N. Belibasakis +5 more
wiley +1 more source
RNA Viruses Linked to Eukaryotic Hosts in Thawed Permafrost
mSystems, 2022 Arctic permafrost is thawing due to global warming, with unknown consequences on the microbial inhabitants or associated viruses. DNA viruses have previously been shown to be abundant and active in thawing permafrost, but little is known about RNA ...
Ruonan Wu +5 more
doaj +1 more source
ngs-docs/2018-cicese-metatranscriptomics: Nov 2018 Workshop Materials
, 2020 developed by N. Tessa Pierce, Taylor Reiter, and C.
Taylor Reiter +2 more
core +1 more source