Results 11 to 20 of about 10,594 (207)

ngs-docs/2018-cicese-metatranscriptomics: Nov 2018 Workshop Materials

, 2020
developed by N. Tessa Pierce, Taylor Reiter, and C.
Taylor Reiter, Tessa Pierce, C. Titus Brown   +2 more
core   +1 more source

Cyanobacterial Blooms Are Not a Result of Positive Selection by Freshwater Eutrophication

Microbiology Spectrum, 2022
Long-standing cyanobacterial harmful algal blooms (CyanoHABs) are known to result from synergistic interaction between elevated nutrients and superior ecophysiology of cyanobacteria.
Yang Yu, Wenduo Cheng, Xiaoyuan Chen, Qisen Guo, Huansheng Cao   +4 more
doaj   +1 more source

Supporting data for the manuscript: "Metagenomics and Metatranscriptomics Suggest Pathways of 3-Chloroaniline Degradation in Wastewater Reactors"

, 2023
Relevant data and statistics related to metagenomics, MAGs, metatranscriptomics, ASVs, and process performance associated to the manuscript: "Metagenomics and Metatranscriptomics Suggest Pathways of 3-Chloroaniline Degradation in Wastewater Reactors" by ...
Florentin Constancias (5991288), Umashankari Chandra Segaran (12911710), Stefan Wuertz (11007832), Hari Seshan (5991287), Ezequiel Santillan (5991266), Rohan B.H. Williams (8127504)   +5 more
core   +1 more source

Integrated Meta-omics Reveals a Fungus-Associated Bacteriome and Distinct Functional Pathways in Clostridioides difficile Infection

mSphere, 2019
There has been no prior application of matched metagenomics and metatranscriptomics in Clostridioides difficile infection (CDI) evaluating the role of fungi in CDI or identifying community functions that contribute to the development of this disease.
David B. Stewart, Justin R. Wright, Maria Fowler, Christopher J. McLimans, Vasily Tokarev, Isabella Amaniera, Owen Baker, Hoi-Tong Wong, Jeff Brabec, Rebecca Drucker, Regina Lamendella   +10 more
doaj   +1 more source

RNA Viruses Linked to Eukaryotic Hosts in Thawed Permafrost

mSystems, 2022
Arctic permafrost is thawing due to global warming, with unknown consequences on the microbial inhabitants or associated viruses. DNA viruses have previously been shown to be abundant and active in thawing permafrost, but little is known about RNA ...
Ruonan Wu, Eric M. Bottos, Vincent G. Danna, James C. Stegen, Janet K. Jansson, Michelle R. Davison   +5 more
doaj   +1 more source

The Osmolyte Ties That Bind: Genomic Insights Into Synthesis and Breakdown of Organic Osmolytes in Marine Microbes

Frontiers in Marine Science, 2021
The production and consumption of organic matter by marine organisms plays a central role in the marine carbon cycle. Labile organic compounds (metabolites) are the major currency of energetic demands and organismal interaction, but these compounds ...
Erin L. McParland, Harriet Alexander, Winifred M. Johnson   +2 more
doaj   +1 more source

Diagnosing Anaerobic Digesters' Function and Performance: From Meta-Omics to Integrated Meta-Omics Analyses. [PDF]

Environ Microbiol Rep
The integration of multiple meta‐omics can tremendously improve our understanding of the structure, function and dynamics of the complex biological system in anaerobic digesters. Created in BioRender. https://BioRender.com/u9rj8ko. ABSTRACT Anaerobic digestion (AD) of organic wastes by microorganisms into biomethane contributes significantly towards ...
Ehiosun KI, Chapleur O, Mazéas L.
europepmc   +2 more sources

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework

, 2021
The Human Microbiome Project (HMP) aided in understanding the role of microbial communities and the influence of collective genetic material (the ‘microbiome’) in human health and disease.
Batut, Bérénice, Delogu, Francesco, Kumar, Praveen, Arntzen, Magnus Ø, Hiltemann, Saskia, Kunath, Benoit J., Leith, Emma, Mehta, Subina, Sajulga, Ray, Johnson, James, Crane, Marie, Jagtap, Pratik D., Griffin, Timothy J.   +12 more
core   +1 more source

DiTing: A Pipeline to Infer and Compare Biogeochemical Pathways From Metagenomic and Metatranscriptomic Data

Frontiers in Microbiology, 2021
Metagenomics and metatranscriptomics are powerful methods to uncover key micro-organisms and processes driving biogeochemical cycling in natural ecosystems.
Chun-Xu Xue, Chun-Xu Xue, Heyu Lin, Xiao-Yu Zhu, Jiwen Liu, Jiwen Liu, Jiwen Liu, Yunhui Zhang, Gary Rowley, Jonathan D. Todd, Meng Li, Xiao-Hua Zhang, Xiao-Hua Zhang, Xiao-Hua Zhang   +13 more
doaj   +1 more source

Table_1_Metagenomics Versus Metatranscriptomics of the Murine Gut Microbiome for Assessing Microbial Metabolism During Inflammation.XLSX

, 2022
Shotgun metagenomics studies have improved our understanding of microbial population dynamics and have revealed significant contributions of microbes to gut homeostasis. They also allow in silico inference of the metagenome.
Michael Bording-Jorgensen (6173270), Karen L. Madsen (8307651), Jessica Hamilton (6016559), Naomi Hotte (406365), Béatrice Lauga (452522), Juan Jovel (403399), Tracy Jordan (403406), Sudip Subedi (12039059), Eric J. Carpenter (117237), Shokrollah Elahi (148819), Jordan Patterson (117292), Andrew L. Mason (9118634), Aissata Nimaga (12039056), Sandra O’Keefe (9671843), Aducio Thiesen (360405), Gane Ka-Shu Wong (5903)   +15 more
core   +1 more source