Results 21 to 30 of about 9,285 (257)

Integrated Meta-omics Reveals a Fungus-Associated Bacteriome and Distinct Functional Pathways in Clostridioides difficile Infection

mSphere, 2019
There has been no prior application of matched metagenomics and metatranscriptomics in Clostridioides difficile infection (CDI) evaluating the role of fungi in CDI or identifying community functions that contribute to the development of this disease.
David B. Stewart, Justin R. Wright, Maria Fowler, Christopher J. McLimans, Vasily Tokarev, Isabella Amaniera, Owen Baker, Hoi-Tong Wong, Jeff Brabec, Rebecca Drucker, Regina Lamendella   +10 more
doaj   +1 more source

The Osmolyte Ties That Bind: Genomic Insights Into Synthesis and Breakdown of Organic Osmolytes in Marine Microbes

Frontiers in Marine Science, 2021
The production and consumption of organic matter by marine organisms plays a central role in the marine carbon cycle. Labile organic compounds (metabolites) are the major currency of energetic demands and organismal interaction, but these compounds ...
Erin L. McParland, Harriet Alexander, Winifred M. Johnson   +2 more
doaj   +1 more source

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework

, 2021
The Human Microbiome Project (HMP) aided in understanding the role of microbial communities and the influence of collective genetic material (the ‘microbiome’) in human health and disease.
Batut, Bérénice, Delogu, Francesco, Kumar, Praveen, Arntzen, Magnus Ø, Hiltemann, Saskia, Kunath, Benoit J., Leith, Emma, Mehta, Subina, Sajulga, Ray, Johnson, James, Crane, Marie, Jagtap, Pratik D., Griffin, Timothy J.   +12 more
core   +1 more source

DiTing: A Pipeline to Infer and Compare Biogeochemical Pathways From Metagenomic and Metatranscriptomic Data

Frontiers in Microbiology, 2021
Metagenomics and metatranscriptomics are powerful methods to uncover key micro-organisms and processes driving biogeochemical cycling in natural ecosystems.
Chun-Xu Xue, Chun-Xu Xue, Heyu Lin, Xiao-Yu Zhu, Jiwen Liu, Jiwen Liu, Jiwen Liu, Yunhui Zhang, Gary Rowley, Jonathan D. Todd, Meng Li, Xiao-Hua Zhang, Xiao-Hua Zhang, Xiao-Hua Zhang   +13 more
doaj   +1 more source

Table_1_Metagenomics Versus Metatranscriptomics of the Murine Gut Microbiome for Assessing Microbial Metabolism During Inflammation.XLSX

, 2022
Shotgun metagenomics studies have improved our understanding of microbial population dynamics and have revealed significant contributions of microbes to gut homeostasis. They also allow in silico inference of the metagenome.
Michael Bording-Jorgensen (6173270), Karen L. Madsen (8307651), Jessica Hamilton (6016559), Naomi Hotte (406365), Béatrice Lauga (452522), Juan Jovel (403399), Tracy Jordan (403406), Sudip Subedi (12039059), Eric J. Carpenter (117237), Shokrollah Elahi (148819), Jordan Patterson (117292), Andrew L. Mason (9118634), Aissata Nimaga (12039056), Sandra O’Keefe (9671843), Aducio Thiesen (360405), Gane Ka-Shu Wong (5903)   +15 more
core   +1 more source

Comparative Fungal Community Analyses Using Metatranscriptomics and Internal Transcribed Spacer Amplicon Sequencing from Norway Spruce

mSystems, 2021
The health, growth, and fitness of boreal forest trees are impacted and improved by their associated microbiomes. Microbial gene expression and functional activity can be assayed with RNA sequencing (RNA-Seq) data from host samples.
Andreas N. Schneider, John Sundh, Görel Sundström, Kerstin Richau, Nicolas Delhomme, Manfred Grabherr, Vaughan Hurry, Nathaniel R. Street   +7 more
doaj   +1 more source

Current concepts, advances, and challenges in deciphering the human microbiota with metatranscriptomics

, 2023
Metatranscriptomics refers to the analysis of the collective microbial tran-scriptome of a sample. Its increased utilization for the characterization of human-associated microbial communities has enabled the discovery of many disease-state related ...
Esko Kankuri, Kankainen, Matti, Kankuri, Esko, Ojala, Teija, Häkkinen, Aino-Elina, Aino-Elina Häkkinen, Matti Kankainen, Teija Ojala   +7 more
core   +1 more source

Microbial Community and Metabolic Activity in Thiocyanate Degrading Low Temperature Microbial Fuel Cells

Frontiers in Microbiology, 2018
Thiocyanate is a toxic compound produced by the mining and metallurgy industries that needs to be remediated prior to its release into the environment.
Gaofeng Ni, Sebastian Canizales, Elias Broman, Domenico Simone, Viraja R. Palwai, Daniel Lundin, Margarita Lopez-Fernandez, Tom Sleutels, Mark Dopson   +8 more
doaj   +1 more source

Metatranscriptomic analyses of honey bee colonies [PDF]

Frontiers in Genetics, 2015
Honey bees face numerous biotic threats from viruses to bacteria, fungi, protists, and mites. Here we describe a thorough analysis of microbes harbored by worker honey bees collected from field colonies in geographically distinct regions of Turkey. Turkey is one of the World's most important centers of apiculture, harboring five subspecies of Apis ...
Tozkar, Cansu Özge, EVANS, Jay D., Kence, Meral, Kence, Aykut, HUANG, Qiang   +4 more
openaire   +4 more sources

Exploring the tymovirids landscape through metatranscriptomics data [PDF]

Archives of Virology, 2021
Abstract Tymovirales is an order of viruses with positive-sense, single-stranded RNA genomes that mostly infect plants, but also fungi and insects. The number of tymovirid sequences has been growing in the last few years with the extensive use of high-throughput sequencing platforms.
Nicolás Bejerman, Humberto Debat
openaire   +2 more sources