Results 31 to 40 of about 10,594 (207)

Use of Metatranscriptomics in Microbiome Research

, 2016
The human intestinal microbiome is a microbial ecosystem that expresses as many as 100 times more genes than the human host, thereby constituting an important component of the human holobiome , which contributes to multiple health and disease processes ...
Gili Zilberman-Schapira, Stavros Bashiardes, Eran Elinav   +2 more
core   +1 more source

Transcriptome-Stable Isotope Probing Provides Targeted Functional and Taxonomic Insights Into Microaerobic Pollutant-Degrading Aquifer Microbiota

Frontiers in Microbiology, 2018
While most studies using RNA-stable isotope probing (SIP) to date have focused on ribosomal RNA, the detection of 13C-labeled mRNA has rarely been demonstrated.
Lauren M. Bradford, Gisle Vestergaard, Gisle Vestergaard, András Táncsics, Baoli Zhu, Michael Schloter, Tillmann Lueders   +6 more
doaj   +1 more source

Metatranscriptomics reveals a shift in microbial community composition and function during summer months in a coastal marine environment

Environmental DNA, 2023
Temperate coastal marine waters are often thermally stratified from spring through fall but can be dynamic and disrupted by tidal currents and wind‐driven upwelling. These mixing events introduce deeper, cooler water with a higher partial pressure of CO2
Ben J. G. Sutherland, Jan F. Finke, Robert Saunders, Snehal Warne, Angela D. Schulze, Jeff H. T. Strohm, Amy M. Chan, Curtis A. Suttle, Kristina M. Miller   +8 more
doaj   +1 more source

Metatranscriptomics Uncover Diurnal Functional Shifts in Bacterial Transgenes with Profound Metabolic Effects. [PDF]

Cell Host Microbe
This dataset contains code and processed data used to perform analysis and generate figures for our manuscript "Diurnal Characterization of Metatranscriptomics Yields Bacterial Transgenes with Pronounced Metabolic Effects" .
Ramos SF, Siguenza N, Zhong W, Mohanty I, Lingaraju A, Richter RA, Karthikeyan S, Lukowski AL, Zhu Q, Nunes WDG, Zemlin J, Xu ZZ, Hasty J, Dorrestein PC, Panda S, Knight R, Zarrinpar A.   +16 more
europepmc   +2 more sources

Metaproteomics Powered By Metatranscriptomics: Towards a Multi-omic Functional Microbiome Analysis Within Galaxy

, 2019
International audienceMicrobiomes play a critical role in health and disease in human hosts and in environmentalecosystems. Characterizing their microbial composition and functional role requires analysis of multi-omics data such as metagenomics ...
Kumar, Praveen, Delogu, Francesco, Batut, Bérénice, Jagtap, Pratik, D, Pope, Phillip, B, Griffin, Timothy, J, Leith, Emma, Easterly, Caleb, Mcgowan, Thomas, Mehta, Subina, Kunath, Benoit, J, Sajulga, Ray, Johnson, James, Crane, Marie, Arntzen, Magnus Ø.   +14 more
core   +4 more sources

Periodontal microbiology and microbial etiology of periodontal diseases: Historical concepts and contemporary perspectives

Periodontology 2000, EarlyView., 2023
Abstract This narrative review summarizes the collective knowledge on periodontal microbiology, through a historical timeline that highlights the European contribution in the global field. The etiological concepts on periodontal disease culminate to the ecological plaque hypothesis and its dysbiosis‐centered interpretation.
Georgios N. Belibasakis, Daniel Belstrøm, Sigrun Eick, Ulvi K. Gursoy, Anders Johansson, Eija Könönen   +5 more
wiley   +1 more source

Current Knowledge and Computational Techniques for Grapevine Meta-Omics Analysis

Frontiers in Plant Science, 2018
Growing grapevine (Vitis vinifera) is a key contribution to the economy of many countries. Tools provided by genomics and bioinformatics did help researchers in obtaining biological knowledge about the different cultivars.
Salvatore Alaimo, Gioacchino P. Marceca, Rosalba Giugno, Alfredo Ferro, Alfredo Pulvirenti   +4 more
doaj   +1 more source

Metatranscriptomics sample dataset

, 2017
<p>Metatranscriptomics sample dataset</p ...
Steffen Lott, Steffen Lott (5240194)
core   +1 more source

Consistency of Targeted Metatranscriptomics and Morphological Characterization of Phytoplankton Communities [PDF]

, 2020
The composition of phytoplankton community is the basis for environmental monitoring and assessment of the ecological status of aquatic ecosystems. Community composition studies of phytoplankton have been based on time-consuming and expertise-demanding ...
Tiirola, Marja, Mäki, Anita, Vuorio, Kristiina, Salmi, Pauliina, Aalto, Sanni L.   +4 more
core   +1 more source

Stool metatranscriptomics: A technical guideline for mRNA stabilisation and isolation [PDF]

, 2015
The complex microbiome of the gut has an enormous impact on human health. Analysis of the transcriptional activity of microorganisms through mRNA sequencing (metatranscriptomics) opens a completely new window into their activity in vivo, but it is highly
Deng, Zhiluo, Husemann, Peter, Tomasch, Jürgen, Michael Jarek, Peter Husemann, Jarek, Michael, Reck, Michael, Wagner-Döbler, Irene, null null, Michael Reck, Jürgen Tomasch, Irene Wagner-Döbler, Zhiluo Deng   +12 more
core   +1 more source