Results 51 to 60 of about 9,285 (257)

Over two decades of research on the marine RNA virosphere

iMeta, 2022
RNA viruses (realm: Riboviria), including RNA phages and eukaryote‐infecting RNA viruses, are essential components of marine ecosystems. A large number of marine RNA viruses have been discovered in the last two decades because of the rapid development of
Meng‐en Liao, Yunyi Xie, Mang Shi, Jie Cui   +3 more
doaj   +1 more source

Characterization of Bacterial Community Dynamics of the Human Mouth Throughout Decomposition via Metagenomic, Metatranscriptomic, and Culturing Techniques

Frontiers in Microbiology, 2021
The postmortem microbiome has recently moved to the forefront of forensic research, and many studies have focused on the idea that predictable fluctuations in decomposer communities could be used as a “microbial clock” to determine time of death ...
Emily C. Ashe, André M. Comeau, Katie Zejdlik, Seán P. O’Connell   +3 more
doaj   +1 more source

Directed Culturing of Microorganisms Using Metatranscriptomics [PDF]

mBio, 2011
ABSTRACT The vast majority of bacterial species remain uncultured, and this severely limits the investigation of their physiology, metabolic capabilities, and role in the environment. High-throughput sequencing of RNA transcripts (RNA-seq) allows the investigation of the diverse physiologies from uncultured ...
Lindsey Bomar, Michele Maltz, Sophie Colston, Joerg Graf   +3 more
openaire   +3 more sources

Metatranscriptomics sample dataset

, 2017
<p>Metatranscriptomics sample dataset</p ...
Steffen Lott, Steffen Lott (5240194)
core   +1 more source

Functional Characteristics of the Flying Squirrel's Cecal Microbiota under a Leaf-Based Diet, Based on Multiple Meta-Omic Profiling

Frontiers in Microbiology, 2018
Mammalian herbivores rely on microbial activities in an expanded gut chamber to convert plant biomass into absorbable nutrients. Distinct from ruminants, small herbivores typically have a simple stomach but an enlarged cecum to harbor symbiotic microbes;
Hsiao-Pei Lu, Po-Yu Liu, Po-Yu Liu, Yu-bin Wang, Yu-bin Wang, Ji-Fan Hsieh, Han-Chen Ho, Shiao-Wei Huang, Chung-Yen Lin, Chih-hao Hsieh, Chih-hao Hsieh, Chih-hao Hsieh, Chih-hao Hsieh, Hon-Tsen Yu, Hon-Tsen Yu   +14 more
doaj   +1 more source

Duodenal Metatranscriptomics to Define Human and Microbial Functional Alterations Associated with Severe Obesity: A Pilot Study

Microorganisms, 2020
Obesity is a multifactorial disorder, and the gut microbiome has been suggested to contribute to its onset. In order to better clarify the role of the microbiome in obesity, we evaluated the metatranscriptome in duodenal biopsies from a cohort of 23 ...
Ilaria Granata, Carmela Nardelli, Valeria D’Argenio, Salvatore Tramontano, Debora Compare, Mario Rosario Guarracino, Gerardo Nardone, Vincenzo Pilone, Lucia Sacchetti   +8 more
doaj   +1 more source

Metatranscriptome profiling of a harmful algal bloom [PDF]

Harmful Algae, 2014
Metagenomic methods provide a powerful means to investigate complex ecological phenomena. Developed originally for study of Bacteria and Archaea, the application of these methods to eukaryotic microorganisms is yet to be fully realized. Most prior environmental molecular studies of eukaryotes have relied heavily on PCR amplification with eukaryote ...
Endymion D, Cooper, Bastian, Bentlage, Theodore R, Gibbons, Tsvetan R, Bachvaroff, Charles F, Delwiche   +4 more
openaire   +2 more sources

To assemble or not to resemble - A validated Comparative Metatranscriptomics Workflow (CoMW) [PDF]

, 2019
BACKGROUND: Metatranscriptomics has been used widely for investigation and quantification of microbial communities' activity in response to external stimuli.
Muhammad Zohaib Anwar, Carsten Suhr Jacobsen, Toke Bang-Andreasen, Anwar, Muhammad Zohaib, Anders Lanzen, Bang-Andreasen, Toke, Lanzen, Anders, Jacobsen, Carsten Suhr   +7 more
core   +1 more source

The occurrence of banana Fusarium wilt aggravates antibiotic resistance genes dissemination in soil

Ecotoxicology and Environmental Safety
The spread of antibiotic resistance genes (ARGs) and subsequent soil-borne disease outbreaks are major threats to soil health and sustainable crop production.
Jiabao Wang, Yannan Ou, Ruochen Li, Chengyuan Tao, Hongjun Liu, Rong Li, Zongzhuan Shen, Qirong Shen   +7 more
doaj   +1 more source

SAMSA: a comprehensive metatranscriptome analysis pipeline

BMC Bioinformatics, 2016
Abstract Background Although metatranscriptomics—the study of diverse microbial population activity based on RNA-seq data—is rapidly growing in popularity, there are limited options for biologists to analyze this type of data.
Samuel T. Westreich, Ian Korf, David A. Mills, Danielle G. Lemay   +3 more
openaire   +4 more sources