Results 21 to 30 of about 18,529 (279)

Integrated genomics, metagenomics and metatranscriptomics to reveal the biocontrol mechanism of <i>Bacillus velezensis</i> JY10 against tobacco target spot disease. [PDF]

Front Microbiol
Yang W, Liu H, Xu R, Peng Y, Xu T, Yang Y, Li Y, Xiang H.   +7 more
europepmc   +3 more sources

ASaiM-MT: a validated and optimized ASaiM workflow for metatranscriptomics analysis within Galaxy framework [version 2; peer review: 2 approved]

F1000Research, 2021
The Earth Microbiome Project (EMP) aided in understanding the role of microbial communities and the influence of collective genetic material (the ‘microbiome’) and microbial diversity patterns across the habitats of our planet.
Subina Mehta, Marie Crane, Emma Leith, Bérénice Batut, Saskia Hiltemann, Magnus Ø Arntzen, Benoit J. Kunath, Phillip B. Pope, Francesco Delogu, Ray Sajulga, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik D. Jagtap   +13 more
doaj   +1 more source

Investigating microbiome and transcriptome data to uncover the key microbial community involved in lignocellulose degradation within the Deulajhari hot spring consortium

Data in Brief, 2023
Geothermally heated spring water contaminated with decomposed leaf biomass creates unique hot spring ecosystems that support the recycling of diverse nutrients and harbor microbial consortia capable of degrading lignocellulose.
Sangita Dixit, Kalpana Sahoo, Mahendra Gaur, Enketeswara Subudhi   +3 more
doaj   +1 more source

Sizing up metatranscriptomics [PDF]

The ISME Journal, 2012
Abstract A typical marine bacterial cell in coastal seawater contains only ∼200 molecules of mRNA, each of which lasts only a few minutes before being degraded. Such a surprisingly small and dynamic cellular mRNA reservoir has important implications for understanding the bacterium’s responses to environmental signals, as well as for our ...
Mary Ann, Moran, Brandon, Satinsky, Scott M, Gifford, Haiwei, Luo, Adam, Rivers, Leong-Keat, Chan, Jun, Meng, Bryndan P, Durham, Chen, Shen, Vanessa A, Varaljay, Christa B, Smith, Patricia L, Yager, Brian M, Hopkinson   +12 more
openaire   +2 more sources

Genome-resolved metatranscriptomics reveals conserved root colonization determinants in a synthetic microbiota

Nature Communications, 2023
The identification of processes activated by specific microbes during microbiota colonization of plant roots has been hampered by technical constraints in metatranscriptomics.
Nathan Vannier, F. Mesny, Felix Getzke, Guillaume Chesneau, Laura Dethier, J. Ordon, Thorsten Thiergart, S. Hacquard   +7 more
semanticscholar   +1 more source

Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics

Microbiome, 2023
Background Bovine respiratory disease (BRD) is one of the most common diseases in intensively managed cattle, often resulting in high morbidity and mortality.
Bárbara P. Brito, M. Frost, Kay Anantanawat, Frederick R Jaya, T. Batterham, S. Djordjevic, Wei-Shan Chang, E. Holmes, A. Darling, P. Kirkland   +9 more
semanticscholar   +1 more source

Combined analysis of microbial metagenomic and metatranscriptomic sequencing data to assess in situ physiological conditions in the premature infant gut. [PDF]

, 2020
Microbes alter their transcriptomic profiles in response to the environment. The physiological conditions experienced by a microbial community can thus be inferred using meta-transcriptomic sequencing by comparing transcription levels of specifically ...
Baker, Robyn, Banfield, Jillian F, Brown, Christopher T, Firek, Brian, Morowitz, Michael J, Olm, Matthew R, Raveh-Sadka, Tali, Sher, Ruth, Sher, Yonatan   +8 more
core   +2 more sources

Expanding the Repertoire of the Plant-Infecting Ophioviruses through Metatranscriptomics Data

bioRxiv, 2023
Ophioviruses (genus Ophiovirus, family Aspiviridae) are plant-infecting viruses with non-enveloped, filamentous, naked nucleocapsid virions. Members of genus Ophiovirus have a segmented single-stranded negative-sense RNA genome (ca.
H. Debat, M. García, N. Bejerman
semanticscholar   +1 more source

Unlocking the Hidden Genetic Diversity of Varicosaviruses, the Neglected Plant Rhabdoviruses

Pathogens, 2022
The genus Varicosavirus is one of six genera of plant-infecting rhabdoviruses. Varicosaviruses have non-enveloped, flexuous, rod-shaped virions and a negative-sense, single-stranded RNA genome. A distinguishing feature of varicosaviruses, which is shared
Nicolas Bejerman, Ralf G. Dietzgen, Humberto Debat   +2 more
doaj   +1 more source

Metatranscriptomic assessment of burn wound infection clearance [PDF]

Clinical Microbiology and Infection, 2021
Peer ...
Ojala, Teija, Lindford, Andrew, Savijoki, Kirsi, Lagus, Heli M, Tommila, Jenni, Medlar, Alan, Kuusela, Pentti I, Varmanen, Pekka, Holm, Liisa, Vuola, Jyrki, Kankuri, Esko, Kankainen, Matti   +11 more
openaire   +3 more sources