Results 81 to 90 of about 1,840,918 (247)
MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics
mSystems, 2022 Metagenome-assembled genomes (MAGs) represent individual genomes recovered from metagenomic data. MAGs are extremely useful to analyze uncultured microbial genomic diversity, as well as to characterize associated functional and metabolic potential in ...
Benjamin Churcheward +4 more
doaj +1 more source
Advanced Science, EarlyView.This graphical abstract presents gut microbial cross‐feeding through a Mechanism–Technology–Application framework. It summarizes major resource‐transfer modes, the experimental and computational tools used to establish causality, and potential interventions involving dietary substrates, live biotherapeutic products, and engineered microbes.
Chuankai Sun +7 more
wiley +1 more source
Metagenome assembly contig sizes
, 2014 Metagenome assembly contig ...
Christopher Beitel (518618)
core +1 more source
Cataloging metagenome-assembled genomes and microbial genes from the athlete gut microbiome
Microbiome Research ReportsAim: Exercise has been increasingly recognized as a potential influencer of the gut microbiome. Nevertheless, findings remain incongruous, particularly in relation to sport-specific patterns. Methods: In this study, we harness all publicly available data from athlete gut microbiome shotgun studies to explore how exercise may influence the ...
Laura Wosinska +5 more
openaire +4 more sources
Advanced Intelligent Discovery, EarlyView.Large language models are transforming microbiome research by enabling advanced sequence profiling, functional prediction, and association mining across complex datasets. They automate microbial classification and disease‐state recognition, improving cross‐study integration and clinical diagnostics.
Jieqi Xing +4 more
wiley +1 more source
236 metagenome-assembled microbial genomes from rivers along a latitudinal gradient
Scientific DataRivers are dynamic ecosystems that play a crucial role in supporting microbial diversity and sustaining a wide range of ecological functions. Here, we used metagenomic sequencing datasets of channel sediments, riparian bulk soils, and riparian rhizosphere soils to construct metagenome-assembled genomes (MAGs) from 30 river wetlands along a latitudinal ...
Xiong, Xiang +4 more
openaire +2 more sources
Genome BiologyMetagenomic analyses of microbial communities have unveiled a substantial level of interspecies and intraspecies genetic diversity by reconstructing metagenome-assembled genomes (MAGs). The MAG database (MAGdb) boasts an impressive collection of 74 representative research papers, spanning clinical, environmental, and animal categories and comprising 13,
Ye, Guo +12 more
openaire +4 more sources
MetaGT: A pipeline for de novo assembly of metatranscriptomes with the aid of metagenomic data
Frontiers in Microbiology, 2022 While metagenome sequencing may provide insights on the genome sequences and composition of microbial communities, metatranscriptome analysis can be useful for studying the functional activity of a microbiome.
Daria Shafranskaya +6 more
doaj +1 more source
Microbiome, 2022 Background Process and function that underlie the assembly of a rhizosphere microbial community may be strongly linked to the maintenance of plant health.
Tao Wen +9 more
doaj +1 more source
BinSPreader: Refine binning results for fuller MAG reconstruction
iScience, 2022 Summary: Despite the recent advances in high-throughput sequencing, metagenome analysis of microbial populations still remains a challenge. In particular, the metagenome-assembled genomes (MAGs) are often fragmented due to interspecies repeats, uneven ...
Ivan Tolstoganov +4 more
doaj +1 more source