Results 101 to 110 of about 1,840,918 (247)

EBI metagenomics—a new resource for the analysis and archiving of metagenomic data [PDF]

, 2013
Metagenomics is a relatively recently established but rapidly expanding field that uses high-throughput next-generation sequencing technologies to characterize the microbial communities inhabiting different ecosystems (including oceans, lakes, soil ...
Vaughan, Daniel, Mitchell, Alex, Field, Dawn, Gonzalez-Beltran, Alejandra, Scheremetjew, Maxim, McAnulla, Craig, Sansone, Susanna-Assunta, Sterk, Peter, Radhakrishnan, Rajesh, Hunter, Sarah, Leinonen, Rasko, Jones, Philip, Jones Philip, Denise, Hubert, Cochrane, Guy, Maslen, John, Oisel, Arnaud, Pesseat, Sebastien, Hubert, Denise, Corbett, Matthew, Fraser, Matthew, Rocca-Serra, Philippe, Hunter, Christopher, Michell, Alex, Maguire, Eamonn, Gift, Nuka, Nuka, Gift   +26 more
core   +2 more sources

The Microbiome as a Mirror: Distinguishing Healthy Individuals From Chronic Constipated Patients and Identifying Those With Hidden Psychiatric Burden

Microbiota Medicine Research, EarlyView.
Gut microbiota signatures distinguish chronic constipated patients from healthy individuals, supporting noninvasive diagnostic potential. Despite challenges in identifying psychiatric‐related comorbidities, microbial alterations, particularly in neurotransmitter and inflammatory pathways, lay the groundwork for future companion diagnostics and ...
Hongyan Qi, Ting Yu, Weichen Liu, Ya Jiang, Die Chen, Li Gao, Hui Li, Yurong Tang   +7 more
wiley   +1 more source

Metagenome-assembled genomes provide new insight into the microbial diversity of two thermal pools in Kamchatka, Russia [PDF]

Scientific Reports, 2019
Abstract Culture-independent methods have contributed substantially to our understanding of global microbial diversity. Recently developed algorithms to construct whole genomes from environmental samples have further refined, corrected and revolutionized understanding of the tree of life.
Laetitia G. E. Wilkins, Cassandra L. Ettinger, Guillaume Jospin, Jonathan A. Eisen   +3 more
openaire   +4 more sources

Characterization of the dynamic microbiome evolution across thrips species

Insect Science, EarlyView.
Comprehensive survey of the microbiome in thrips. The dominant bacterial genera found in thrips include intracellular ones, such as Wolbachia and Spiroplasma, and extracellular ones, including Serratia, Pantoea, and Acinetobacter. We isolated and sequenced high‐quality genomes of two dominant symbionts, Pantoea dispersa and Serratia marcescens.
Xiaodi Hu, Zhaohui Shi, Yangwei Gao, Hanze Zheng, Lin Lin, Jian‐Ping Chen, Yong Chen, Chuan‐Xi Zhang, Yiyuan Li   +8 more
wiley   +1 more source

Pseudomyrmex nigropilosus larval metagenome assembly

, 2018
Assembly of the metagenome obtained from dissected meconia of Pseudomyrmex nigropilosus larvae from colony BER0554.
Stefanie Kautz (161688), Kautz, Stefanie, Wray, Brian D., Benjamin E. R. Rubin (173233), Moreau, Corrie S., Corrie S. Moreau (111971), Brian D. Wray (5625629), Rubin, Benjamin E. R.   +7 more
core   +1 more source

Strain-resolved de-novo metagenomic assembly of viral genomes and microbial 16S rRNAs

Microbiome
Abstract Background Metagenomics is a powerful approach to study environmental and human-associated microbial communities and, in particular, the role of viruses in shaping them.
Annika Jochheim, Florian A. Jochheim, Alexandra Kolodyazhnaya, Étienne Morice, Martin Steinegger, Johannes Söding   +5 more
openaire   +5 more sources

Effect of Social Rank on Gut Microbes and Their Metabolites of Greater Long‐Tailed Hamsters (Tscherskia triton)

Integrative Zoology, EarlyView.
Social rank in greater long‐tailed hamsters (Tscherskia triton) shapes gut microbiota composition and metabolite profiles. Dominant males exhibit a “high‐vigilance, metabolically activated” phenotype, with elevated aggression and specific gut microbiota enriched in energy‐harvesting taxa and fecal queuine.
Da Zhang, Xiaoming Xu, Zhibin Zhang
wiley   +1 more source

Metagenome-assembled genomes (MAGs)

The MetaWRAP pipeline was employed for genome assembly and binning. Specifically, MEGAHIT was used to assemble sequences and generate contigs. Prodigal was used to predict open reading frames (ORFs) in each contig.
Zhou (18148486)
core   +1 more source

Pseudomyrmex flavicornis adult metagenome assembly

, 2018
Assembly of the metagenome obtained from dissected guts of adult Pseudomyrmex flavicornis from colony BER0517.
Stefanie Kautz (161688), Kautz, Stefanie, Wray, Brian D., Benjamin E. R. Rubin (173233), Moreau, Corrie S., Corrie S. Moreau (111971), Brian D. Wray (5625629), Rubin, Benjamin E. R.   +7 more
core   +1 more source

Diagnostic metagenomics : potential applications to bacterial, viral and parasitic infections [PDF]

, 2014
The term 'shotgun metagenomics' is applied to the direct sequencing of DNA extracted from a sample without culture or target-specific amplification or capture.
M. J. Pallen, Pallen, Mark J.
core   +1 more source