Results 111 to 120 of about 1,840,918 (247)

Exploring high-quality microbial genomes by assembling short-reads with long-range connectivity

Nature Communications
Although long-read sequencing enables the generation of complete genomes for unculturable microbes, its high cost limits the widespread adoption of long-read sequencing in large-scale metagenomic studies.
Zhenmiao Zhang, Jin Xiao, Hongbo Wang, Chao Yang, Yufen Huang, Zhen Yue, Yang Chen, Lijuan Han, Kejing Yin, Aiping Lyu, Xiaodong Fang, Lu Zhang   +11 more
doaj   +1 more source

High-quality Acinetobacter genomes recovered from combat wounds via metagenomic sequencing resemble cultured isolate genomes

Microbiology Spectrum
The ability to accurately characterize wound pathogens is critical to informing clinical decisions for wound infections with complex treatment requirements.
Jeffrey A. Kimbrel, James B. Thissen, Felipe A. Lisboa, Shalini Mabery, Crystal J. Jaing, Eric A. Elster, Seth A. Schobel, Nicholas A. Be   +7 more
doaj   +1 more source

Gut Microbiota of Gray Snub‐Nosed Monkeys: Adaptation to Seasonal Variations Through Energy Compensation and Thermogenesis

Integrative Zoology, EarlyView.
Based on metagenome‐assembled genomes (MAGs), the gut microbiota of the gray snub‐nosed monkeys recovered 1229 non‐redundant MAGs. The gut microbiota showed an enhanced capacity to produce energy substrates with increased conversion activity of these substrates during winter.
Yue Sun, Mingyi Zhang, Xiaochen Wang, Xiaolong Huang, Yanze Yu, Huijuan Pan, Haibo Li, Lei Shi, Wei Yang, Chen Zhang, Bo Ding, Xun Liu, Jianfeng Li, Changjiang Qian, Boxing Cheng, Chao Zhang, Jingcheng Ran, Ming Li   +17 more
wiley   +1 more source

metagenome-atlas/atlas: Bug fixes Drep

, 2021
ATLAS - Three commands to start analyzing your metagenome ...
Silas Kieser, Jackson M. Tsuji, Richard Allen White III, Christopher Bottoms, Joe Brown, Sean M. Colby, Vladimir Mikryukov, wangzc, Chris Overall, Mattias de Hollander, C. Titus Brown, Colin Brislawn   +11 more
core   +1 more source

Preliminary High-Throughput Metagenome Assembly [PDF]

, 2007
Metagenome data sets present a qualitatively different assembly problem than traditional single-organism whole-genome shotgun (WGS) assembly. The unique aspects of such projects include the presence of a potentially large number of distinct organisms and
Dusheyko, Serge
core   +1 more source

Multi‐Omics Analysis Reveals Coordinated Adaptations in Genes, Metabolism, and Gut Microbiota Underpinning Herbivory in Lordiphosa Flies

Integrative Zoology, EarlyView.
Multi‐omics analysis reveals that herbivorous adaptation in Lordiphosa flies arises from coordinated interactions across the genome, transcriptome, and gut microbiota: genomic expansions of detoxification (e.g., cytochrome P450s) and carbohydrate metabolism gene families, transcriptomic upregulation of energy pathways like lipid oxidation and ...
Run Guo, Jianjun Gao, Caixian Zhang, Zhiheng Chang, Yanbo Sun   +4 more
wiley   +1 more source

Metagenome raw count gene abundances

, 2019
This datafile contains raw counts for ORFs in the co-assembly for each of the metagenome samples from 2012 at the Linnaeus Microbial Observatory ...
John Sundh (4862428)
core   +1 more source

metagenome-atlas/atlas: GTDB v 207 low memory profiling

, 2022
New Features GTDB version 207 Low memory taxonomic annotation Minor changes Fix Typos by @roshni-b in https://github.com/metagenome-atlas/atlas/pull/520 Speed up DRAM annotations by @jmtsuji in https://github.com/metagenome-atlas/atlas/pull/534 Full ...
Silas Kieser, Richard Allen White III, Joe Brown, Vladimir Mikryukov, Roshni Biswas, Yan Hui, Jackson M. Tsuji, Christopher Bottoms, Cedric Midoux, Jie Zhu, Sean M. Colby, wangzc, Chris Overall, Mattias de Hollander, C. Titus Brown, Colin Brislawn   +15 more
core   +1 more source

Snake Gut Microbiota as a Source of Anti‐Inflammatory Probiotics: Isolation and Functional Characterization of Two Novel Strains

Integrative Zoology, EarlyView.
This study assessed the probiotic potential of intestinal microbiomes from five snake species using metagenomics and in vitro isolation, identifying two promising strains (Lactobacillus johnsonii DA0116 and Limosilactobacillus reuteri DA0218) through comprehensive screening.
Xuena Kang, Lan Hu, Jiarong Song, Zhenjie Zhang, Yi Li, Qingqing Zhang, Cuiling Luo, Yu Pang, Peng Guo, Bisong Yue, Ping Li, Zhenxin Fan   +11 more
wiley   +1 more source

Species assignments of metagenome assembly contigs

, 2014
Species assignments of metagenome assembly ...
Christopher Beitel (518618)
core   +1 more source