Results 121 to 130 of about 1,840,918 (247)

Table_3_Recovery of High Quality Metagenome-Assembled Genomes From Full-Scale Activated Sludge Microbial Communities in a Tropical Climate Using Longitudinal Metagenome Sampling.XLS

, 2022
The analysis of metagenome data based on the recovery of draft genomes (so called metagenome-assembled genomes, or MAG) has assumed an increasingly central role in microbiome research in recent years.
Larry C. -W. Liew (12858437), Ying Yu Law (7387427), Thi Quynh Ngoc Nguyen (12858440), Mindia A. S. Haryono (11010446), Daniela I. Drautz-Moses (3329922), Rohan B. H. Williams (6881399), Stephan C. Schuster (8778665), Krithika Arumugam (6594770), Stefan Wuertz (1298772)   +8 more
core   +1 more source

Seasonal Dynamics of Community and Function of Gut Microbiome in Taihangshan Macaque (Macaca mulatta tcheliensis): Inferred From Metagenomic Data

Integrative Zoology, EarlyView.
A total of 435 non‐redundant metagenome‐assembled genomes (MAGs) were obtained from fecal samples of Taihangshan macaque across all four seasons. The alpha diversity of the gut microbiome in spring and winter was significantly higher than in summer and autumn. Furthermore, marked differences were detected in functional pathways and carbohydrate enzymes
Yanyan Zhou, Qi Shao, Chunbo Liu, Jundong Tian, Xiaowen Guan, Xi Zhang, Jiqi Lu   +6 more
wiley   +1 more source

Taxonomic classification of metagenomic shotgun sequences with CARMA3. [PDF]

, 2011
Gerlach W, Stoye J. Taxonomic classification of metagenomic shotgun sequences with CARMA3. Nucleic Acids Res. 2011;39(14):e91.The vast majority of microbes are unculturable and thus cannot be sequenced by means of traditional methods.
Jens Stoye, Wolfgang Gerlach, Gerlach, Wolfgang, Stoye, Jens ; https://orcid.org/   +3 more
core   +1 more source

The chromosomal genome sequence of the kidney sponge, Chondrosia reniformis Nardo, 1847, and its associated microbial metagenome sequences [version 1; peer review: 2 approved, 1 approved with reservations]

Wellcome Open Research
We present a genome assembly from a specimen of Chondrosia reniformis (kidney sponge; Porifera; Demospongiae; Chondrillida; Chondrillidae). The genome sequence has a total length of 117.37 megabases.
Vassiliki Koutsouveli, Eerik Aunin, Camilla Santos, Victoria McKenna, Ute Hentschel, Lucia Pita, Manuel Maldonado, Elizabeth Sinclair, Ana Riesgo, Graeme Oatley, Haoyu Niu, Noah Gettle, Michael Paulini, Rebecca O’Brien   +13 more
doaj   +1 more source

Gut Microbiota Analysis and Comparison in Forest Musk Deer (Moschus berezovskii) of Different Ages and Musk‐Secreting Periods

Integrative Zoology, EarlyView.
Metagenomic sequencing was used to analyze fecal microbiota of captive male forest musk deer (FMD) from the Sichuan Institute of Musk Deer Breeding across ages and musk‐secreting periods. Gut microbiota was generally stable and dominated by Firmicutes, while age and musk secretion shaped microbial composition and function, with musk collection linked ...
Jiuyan Jiang, Qiuping Huang, Fei Wu, Pingwei Liang, Linping Fan, Xia Zhou, Chengli Zheng, Xin Shi, Huina Song, Ji Wang, Jing Xue Luo, Ji Chen, Qinlin Yang, Siqi Peng, Lingqian Yin, Dejun Zeng, Hang Jie, Guangxiang Zhu   +17 more
wiley   +1 more source

Metagenome reveals potential microbial degradation of hydrocarbon coupled with sulfate reduction in an oil-immersed chimney from Guaymas Basin

Frontiers in Microbiology, 2013
Deep-sea hydrothermal vent chimneys contain a high diversity of microorganisms, yet the metabolic activity and the ecological functions of the microbial communities remain largely unexplored.
Ying eHe, Ying eHe, Xiang eXiao, Xiang eXiao, Fengping eWang, Fengping eWang   +5 more
doaj   +1 more source

A phenotype‐based framework to measure functional redundancy in microbial ecosystems

Methods in Ecology and Evolution, EarlyView.
Abstract Functional redundancy is a key biological concept that offers critical insights into microbial ecosystem stability and responses to environmental perturbations. Existing methods to quantify redundancy typically rely on gene annotations as functional units, limiting their ability to capture complex or partially characterised traits and making ...
Sofia Fraulini, Davide Sanguineti, Guido Zampieri, Laura Treu, Stefano Campanaro   +4 more
wiley   +1 more source

Metagenome assembly and MAGs from shallow-water and exposed mats from the Solar Lake, Taba, Egypt

<p>Metagenome assembly and MAGs from the Solar Lake, Taba, Egypt shallow-water (S-SO1 and S-SO3) and exposed (S-SO2 and S-SO4) microbial mats.</p> <p>SO1-final.contigs.fa = fatsta file containing the contigs from the S-SO1 (N-SOshallow ...
Elbehery, Ali H. A., Siam, Rania, Abdallah, Rehab   +2 more
core   +1 more source

Table_4_Recovery of High Quality Metagenome-Assembled Genomes From Full-Scale Activated Sludge Microbial Communities in a Tropical Climate Using Longitudinal Metagenome Sampling.XLS

, 2022
The analysis of metagenome data based on the recovery of draft genomes (so called metagenome-assembled genomes, or MAG) has assumed an increasingly central role in microbiome research in recent years.
Larry C. -W. Liew (12858437), Ying Yu Law (7387427), Thi Quynh Ngoc Nguyen (12858440), Mindia A. S. Haryono (11010446), Daniela I. Drautz-Moses (3329922), Rohan B. H. Williams (6881399), Stephan C. Schuster (8778665), Krithika Arumugam (6594770), Stefan Wuertz (1298772)   +8 more
core   +1 more source

Crystal structure and biochemical analysis of the polyester‐degrading carboxylesterase SM0281 from the symbiotic legume‐associated rhizobacterium Sinorhizobium (Ensifer) meliloti

The FEBS Journal, EarlyView.
The microbial degradation of synthetic polyesters such as polyethylene terephthalate (PET) is mediated by diverse α/β‐hydrolases, many of which remain poorly characterized. In this study, we investigated the α/β‐hydrolase SM0281 from Sinorhizobium meliloti and found that it exhibits robust carboxylesterase and polyesterase activities toward PET, PCL ...
Sofia Lemak, Anna N. Khusnutdinova, Peter J. Stogios, Elena Evdokimova, Alexei Savchenko, Peter N. Golyshin, Elizabeth A. Edwards, Alexander F. Yakunin   +7 more
wiley   +1 more source