Results 131 to 140 of about 1,840,918 (247)

metagenome-atlas/atlas: Fix eggNOGmapper

, 2020
ATLAS - Three commands to start analysing your metagenome ...
Silas Kieser, Jackson M. Tsuji, Richard Allen White III, Christopher Bottoms, Joe Brown, Sean M. Colby, Vladimir Mikryukov, wangzc, Chris Overall, Mattias de Hollander, C. Titus Brown, Colin Brislawn   +11 more
core   +1 more source

Additional file 10: of Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes

, 2017
Optimized workflow. Guide to optimized workflow to reconstruct metagenome-assembled genomes. Description of the programs used in this study at each step and the evaluation parameters calculation is provided as step by step workflow. (DOCX 148 kb)
Papudeshi, Bhavya, Haggerty, J., Doane, Michael, Morris, Megan, Walsh, Kevin, Beattie, Douglas, Pande, Dnyanada, Zaeri, Parisa, Silva, Genivaldo, Thompson, Fabiano, Edwards, Robert, Dinsdale, Elizabeth   +11 more
openaire   +1 more source

Unveiling soil microbial diversity through ultra‐deep short‐read metagenomic sequencing and co‐assembly [PDF]

iMeta
By combining ultra-deep short-read shotgun metagenomic sequencing with 5-sample co-assembly across 600 agricultural soil samples, we significantly enhanced the representation and recovery of microbial communities in both clay and sandy soils. Despite an average of 107 Gb clean reads per sample, projections indicated that 1-4 Tb per sample would be ...
Pi Lærke Johansen, Ioanna Chatzigiannidou, Lelde Berzina, Karsten Kristiansen, Susanne Brix   +4 more
openaire   +3 more sources

Table_1_Recovery of High Quality Metagenome-Assembled Genomes From Full-Scale Activated Sludge Microbial Communities in a Tropical Climate Using Longitudinal Metagenome Sampling.XLS

, 2022
The analysis of metagenome data based on the recovery of draft genomes (so called metagenome-assembled genomes, or MAG) has assumed an increasingly central role in microbiome research in recent years.
Larry C. -W. Liew (12858437), Ying Yu Law (7387427), Thi Quynh Ngoc Nguyen (12858440), Mindia A. S. Haryono (11010446), Daniela I. Drautz-Moses (3329922), Rohan B. H. Williams (6881399), Stephan C. Schuster (8778665), Krithika Arumugam (6594770), Stefan Wuertz (1298772)   +8 more
core   +1 more source

Metagenome-Assembled Genomes (MAGs): Advances, Challenges, and Ecological Insights

Microorganisms
Metagenome-assembled genomes (MAGs) have revolutionized microbial ecology by enabling the genome-resolved study of uncultured microorganisms directly from environmental samples.
Salvador Mirete, Mercedes Sánchez-Costa, Jorge Díaz-Rullo, Carolina González de Figueras, Pablo Martínez-Rodríguez, José Eduardo González-Pastor   +5 more
doaj   +1 more source

Mapping the omics landscape for peri‐implant diseases: A scoping review

Periodontology 2000, EarlyView.
Abstract Objectives To map omics evidence across peri‐implant health, peri‐implant mucositis, and peri‐implantitis, and to identify recurring molecular patterns and candidate biomarker signals relevant to diagnosis, monitoring, and treatment. Materials and Methods This scoping review included human studies using genomics, DNA methylation–based ...
Ethan Ng, Ioannis Fragkioudakis, Jeniffer Perussolo, John Rong Hao Tay, Elena Calciolari, Nikos Donos   +5 more
wiley   +1 more source

metagenome-atlas/atlas: V2.0.0

, 2019
<p>ATLAS - Three commands to start analysing your metagenome data</p ...
Silas Kieser, Joe Brown
core   +1 more source

A Microbial Metagenome (Leucobacter sp.) in Caenorhabditis Whole Genome Sequences [PDF]

, 2013
DNA of apparently recent bacterial origin is found in the genomic sequences of Caenorhabditis angaria and Caenorhabditis remanei. Here we present evidence that the DNA belongs to a single species of the genus Leucobacter (high-GC Gram+Actinobacteria ...
Riccardo Percudani, PERCUDANI, Riccardo
core   +1 more source

Metagenome-assembled genomes provide insight into the microbial taxonomy and ecology of the Buhera Soda Pans, Zimbabwe

PLOS ONE
Abstract The use of metagenomics has substantially improved our understanding of the taxonomy, phylogeny and ecology of extreme environment microbiomes. Advances in bioinformatics now permit the reconstruction of almost intact microbial genomes, called metagenome-assembled genomes (MAGs), from metagenomic sequence ...
Ngonidzashe Mangoma, Nerve Zhou, Thembekile Ncube   +2 more
openaire   +4 more sources

Challenges and Future Directives of Synthetic Biology in Engineering Plant–Microbe Partnerships for Sustainable Agriculture

Biotechnology and Bioengineering, Volume 123, Issue 10, Page 2491-2519, October 2026.
ABSTRACT Synthetic biology has recently proven to be a valuable tool for enhancing agriculture even in the face of environmental and biological stresses. Understanding the challenges that militate synthetic biology will assist in ensuring safe, stable, and scalable crop production.
Ben Jesuorsemwen Enagbonma, Rebaona Reaobaka Molefe‐Madlaliso, Alaba Adewole Adebayo, Oghoye Priscilla Oyedoh, Godfrey Okainemen Oribhabor, Oluwaseun Emmanuel Shittu, Olubukola Oluranti Babalola   +6 more
wiley   +1 more source