Results 151 to 160 of about 1,840,918 (247)

Livestock Multi‐Omics Integration: A Systematic Framework From Statistical Association to Causal Interpretation

Advanced Science, Volume 13, Issue 50, 7 September 2026.
A three‐tier livestock multi‐omics framework resolves four typical analytical pitfalls. Moving from statistical association through machine learning preprocessing to triple‐modal causal inference, it converts omics results into genomic selection and gene editing strategies to achieve One Health, underpinned by multi‐omics data, multimodal sequencing ...
Jiying Wen, Zhongyu Wang, Jieping Huang, Fen Li, Ningbo Chen, Yun Ma   +5 more
wiley   +1 more source

Metagenome-assembled genomes from microbial communities producing lactic acid from dairy residues

Microbiology Resource Announcements
ABSTRACT To advance the knowledge of microbial communities capable of fermenting agro-industrial residues into value-added products, we report metagenomes of microbial communities from four anaerobic bioreactors fed a mixture of ultra-filtered milk permeate and cottage cheese acid whey.
Faith Koester, Kevin S. Myers, Timothy J. Donohue, Daniel R. Noguera   +3 more
openaire   +2 more sources

CarpeDeam: a de novo metagenome assembler for heavily damaged ancient datasets

Genome Biology
De novo assembly of ancient metagenomic datasets is a challenging task. Ultra-short fragment size and characteristic postmortem damage patterns of sequenced ancient DNA molecules leave current tools ill-equipped for ideal assembly.
Louis Kraft, Johannes Söding, Martin Steinegger, Annika Jochheim, Peter Wad Sackett, Antonio Fernandez-Guerra, Gabriel Renaud   +6 more
doaj   +1 more source

Microbial diversity and metabolic predictions of high-temperature streamer biofilms using metagenome-assembled genomes

Scientific Reports
High-temperature streamer biofilm communities (SBCs) are often dominated by Aquificota, which can comprise over 90% of the microbial population in shallow water channels, such as those found at Mammoth hot springs of Yellowstone National Park and the Rehai hot springs in China. This study examines SBCs from the Dusun Tua (DT) hot spring in Malaysia (75 
Tan, Jia Hao, Liew, Kok Jun, Sani, Rajesh K., Samanta, Dipayan, Pointing, Stephen B., Chan, Kok-Gan, Goh, Kian Mau   +6 more
openaire   +2 more sources

You'll never dry alone: cross‐kingdom metabolic coupling supports the desiccation resilience in a macroalgal holobiont

New Phytologist, EarlyView.
José Flores‐Uribe
wiley   +1 more source

Lifestyle Impacts the Oral Microbiome of Classical and Post‐Classical Societies in Italy

American Journal of Biological Anthropology, Volume 191, Issue 1, September 2026.
ABSTRACT Objectives The fall of the Roman Empire (476 CE) profoundly affected the lives of its peoples due to the political, administrative, and territorial changes that occurred. The majority of written records of the time focus on the social élite, leaving larger parts of the population understudied.
Martina Farese, Markella Moraitou, Chenyu Jin, Adrian Forsythe, Ileana Micarelli, Tom van der Valk, Giorgio Manzi, Laura Parducci, Mary Anne Tafuri, Katerina Guschanski   +9 more
wiley   +1 more source

Microbial metagenome of urinary tract infection

, 2018
Urine culture and microscopy techniques are used to profile the bacterial species present in urinary tract infections. To gain insight into the urinary flora, we analyzed clinical laboratory features and the microbial metagenome of 121 clean-catch urine ...
Kelvin J. Moncera, Moncera, K.J., Yu, Y., Nelson, K.E., Li, W., Ahmed Moustafa, Karen E. Nelson, Torralba, M.G., Pieper, R., J. Craig Venter, Amalio Telenti, Manuel, O., Moustafa, A., Telenti, A., Manolito G. Torralba, Oriol Manuel, Venter, J.C., Harinder Singh, Singh, H., Biggs, W., William Biggs, Rembert Pieper, Weizhong Li, Yanbao Yu   +23 more
core   +1 more source

Gut Microbiota Differences in Wild Asian Elephants From Pu'er, China

Ecology and Evolution, Volume 16, Issue 9, September 2026.
This study compared the gut microbiota of two wild Asian elephant populations in Jiangcheng (JC) and Liushun (LS), Yunnan, China. Significant differences in microbial structure, diversity, and function were found. Across samples, 24 phyla, 48 classes, 98 orders, 164 families, 288 genera, and 351 species were annotated.
Zheng Jing, Zhou Jiuxuan, Liu Xia, Wang Binghui, Wang Yixuan, Cao Hui, Lu Tihuo   +6 more
wiley   +1 more source

Microbial diversity and metabolic pathways linked to benzene degradation in petrochemical-polluted groundwater

Environment International
The rapid advance in shotgun metagenome sequencing has enabled us to identify uncultivated functional microorganisms in polluted environments. While aerobic petrochemical-degrading pathways have been extensively studied, the anaerobic mechanisms remain ...
Ruihuan Zhang, Zhencheng Ye, Xue Guo, Yunfeng Yang, Guanghe Li   +4 more
doaj   +1 more source

Antarctic soil microbiomes encode structurally conserved and phylogenetically diverse beta‐lactamases

iMetaOmics, Volume 3, Issue 3, September 2026.
An integrative metagenomic framework combining sequence, structural, and functional inference reveals a phylogenetically diverse and structurally conserved repertoire of putative beta‐lactamases across Antarctic soil microbiomes, with predominance of class A and subclass B3 enzymes and limited but detectable associations with mobile genetic elements ...
José Coche‐Miranda, Patricio Arros, Nicolás Canales, Camilo Berríos‐Pastén, Gastón Azziz, Rosalba Lagos, Julieta Orlando, Francisco P. Chávez, Andrés E. Marcoleta   +8 more
wiley   +1 more source