Results 161 to 170 of about 1,840,918 (247)

Metagenome-assembled genomes reveal microbial signatures and metabolic pathways linked to coronary artery disease

mSystems
ABSTRACT Gut microbiota has emerged as a critical factor influencing cardiovascular disease (CVD) risk, particularly coronary artery disease (CAD) development. Using fecal metagenomic shotgun sequencing, we investigated gut microbiota signatures associated with CAD and ...
Soomin Lee, Shahbaz Raza, Eun-Ju Lee, Yoosoo Chang, Seungho Ryu, Hyung-Lae Kim, Si-Hyuck Kang, Han-Na Kim   +7 more
openaire   +2 more sources

Warm‐wet transition restructures arid lake microbiomes and functional potential

iMetaOmics, Volume 3, Issue 3, September 2026.
This study summarizes how a long‐term warm‐dry to warm‐wet transition restructures microbiomes and functional potential in Lake Bosten, an arid lake in northwestern China. Warm‐wet hydroclimatic change increased water level and hydrological connectivity, while decreasing salinity and total nitrogen.
Zhen Shen, Xingchen Li, Zhijun Gong, Yang Hu, Yongjiu Cai, Keqiang Shao, Guang Gao, Robbie M. Martin, Xiangming Tang   +8 more
wiley   +1 more source

Environmental instability reduces shock resistance by enriching specialist taxa with distinct two component regulatory systems

npj Biofilms and Microbiomes
Different microbial communities are impacted disproportionately by environmental disturbances. The degree to which a community can remain unchanged under a disturbance is referred to as resistance1.
Simon Mills, Umer Zeeshan Ijaz, Piet N. L. Lens   +2 more
doaj   +1 more source

Viruses in the sediments around the trenches harbor diverse survival mechanisms

iMetaOmics, Volume 3, Issue 3, September 2026.
Deep‐sea trenches are the deepest and most isolated environments in the global ocean but the diversity and adaptation of the viral communities remain poorly characterized. In this study, 5563 viral operational taxonomic units (vOTUs) were identified from sediments of the Yap Trench and Western Caroline Basin.
Yue Su, Hao Yu, Shujuan Sun, Kaiyang Zheng, Ziyue Wang, Chen Gao, Guangxue Li, Xiaoshou Liu, Hongbing Shao, David Paez‐Espino, Andrew McMinn, Yantao Liang, Min Wang   +12 more
wiley   +1 more source

Evidence tiers for strain‐resolved long‐read metagenomics

iMetaOmics, Volume 3, Issue 3, September 2026.
Long‐read metagenomics links variants, repeats, and mobile elements across individual molecules and can reveal lineage turnover that is obscured at the species level. The strength of the resulting inference, however, depends on the type and genomic span of the recovered linkage. We distinguish four evidence units—strain profiles, local haplotype blocks,
Yanhua Han, Yunjuan Peng, Minghui Li, Xiaoyuan Wei, Jianmin Chai, Jiangchao Zhao, Ying Li, Feilong Deng   +7 more
wiley   +1 more source

Reconstruction of Metagenome-Assembled Microbial Genomes from a Micro-biome (Poster)

, 2018
Microbiome/host interactions describe characteristics that affect the host health; shotgun metagenomics sequences microbiome samples, allowing us to analyze its taxonomic and metabolic potential.
Papudeshi, Bhavya
core   +1 more source

Artificial intelligence driven diet‐intestinal microbiota‐host health integration: A four‐dimensional paradigm for advancing host wellness research

iMetaOmics, Volume 3, Issue 3, September 2026.
This graphical abstract presents a novel Diet‐Artificial Intelligence (AI)‐intestinal Microbiota–Host Health paradigm integrating microbiota‐centric pathways and an AI‐driven multi‐omics workflow. Diet shapes gut bacteria that regulate intestinal mucosal integrity, immune signaling, and gut–brain neurotransmitters to influence host health.
Tianle He, Shuobo Zhang, Jiaxin Chen, Xiaoling Zheng, Jixin Zhao, Huifeng Li, Jiani Mao, Ju Luo, Jundan Zheng, Dengjun Ma, Lihong Wang, Junhui Liu, Wen Tian, Shuangming Yang, Chengli Liu, Ke Tian, Zhenguo Yang   +16 more
wiley   +1 more source

Small‐ and large‐scale patches shape benthic microbial community structure and functional gene composition in streams at the subcontinental scale

Limnology and Oceanography Letters, Volume 11, Issue 5, September 2026.
Abstract Streams process organic matter as water moves along the land‐to‐ocean continuum, making important contributions to global biogeochemical cycles. Yet, predicting stream microbial metabolism associated with biogeochemical transformations at broad spatial scales remains challenging.
Richard LaBrie, Rebecca L. Maher, Kelly S. Aho, Brittni L. Bertolet, Nicholas E. Ray, Paula C.J. Reis, Andrew L. Robison, Shannon L. Speir   +7 more
wiley   +1 more source

Compartment‐Specific Functional and Taxonomic Responses of Plant Growth‐Promoting Microbiomes Following Oxytetracycline Trunk Injection in Citrus

Journal of Sustainable Agriculture and Environment, Volume 5, Issue 3, September 2026.
ABSTRACT Huanglongbing (HLB), caused by Candidatus Liberibacter asiaticus, is the most destructive disease affecting citrus production worldwide. Trunk injection of oxytetracycline (OTC) is increasingly used to suppress the pathogen and improve tree performance, yet its ecological consequences for plant‐associated microbiomes remain poorly understood ...
Antonio Castellano‐Hinojosa, Jesús González‐López, Sarah L. Strauss, Ute Albrecht   +3 more
wiley   +1 more source

Complete metagenome-assembled genome sequence of Solidesulfovibrio sp. DCME from a dichloromethane dechlorinating microbial community

Microbiology Resource Announcements
ABSTRACT Here, we announce the closed genome of Solidesulfovibrio sp. DCME, assembled from metagenomic sequencing of an anaerobic dichloromethane mineralizing enrichment culture. The Solidesulfovibrio
Olivia Bulka, Elizabeth A. Edwards
openaire   +2 more sources