Results 121 to 130 of about 68,764 (347)

Genome-wide mapping and characterization of microsatellites in the swamp eel genome

Scientific Reports, 2017
We described genome-wide screening and characterization of microsatellites in the swamp eel genome. A total of 99,293 microsatellite loci were identified in the genome with an overall density of 179 microsatellites per megabase of genomic sequences.
Zhigang Li, Feng Chen, Chunhua Huang, Weixin Zheng, Chunlai Yu, Hanhua Cheng, Rongjia Zhou   +6 more
doaj   +1 more source

Fusobacterium nucleatum infection correlates with two types of microsatellite alterations in colorectal cancer and triggers DNA damage

Gut Pathogens, 2020
Fusobacterium nucleatum (Fn) is frequently found in colorectal cancers (CRCs). High loads of Fn DNA are detected in CRC tissues with microsatellite instability-high (MSI-H), or with the CpG island hypermethylation phenotype (CIMP).
Yoshiki Okita, Minoru Koi, Koki Takeda, Ryan Ross, Bhramar Mukherjee, Erika Koeppe, Elena M. Stoffel, Joseph A. Galanko, Amber N. McCoy, Temitope O. Keku, Yoshinaga Okugawa, Takahito Kitajima, Yuji Toiyama, Eric Martens, John M. Carethers   +14 more
doaj   +1 more source

Mendelian Inheritance Pattern and High Mutation Rates of Microsatellite Alleles in the Diatom Pseudo-nitzchia multistriata [PDF]

, 2012
The diatom Pseudo-nitzschia multistriata exhibits a diplontic life cycle composed of an extensive phase of vegetative cell division and a brief phase of sexual reproduction.
Amos, Bengtsson, Brinkmann, Callen, Casteleyn, Chepurnov, Chepurnov, Christophe Legrand, Cloutier, Cock van Oosterhout, De Meester, Dobrowolski, Douhovnikoff, Duret, D’Alelio, D’Alelio, D’Alelio, Ellegren, Ellegren, Ellegren, Evans, Gabriele Procaccini, Guillard, Halkett, Hohoff, Härnström, Kruglyak, Lakeman, Li, Marina Montresor, Ouborg, O’Connell, Reece, Reusch, Round, Rynearson, Rynearson, Rynearson, Schurko, Selkoe, Seyfert, Spurgin, Sylvie V.M. Tesson, Tesson, Valière, van Oosterhout, van Oosterhout, Vanoverbeke, White, Wiebe H.C.F. Kooistra, Zar   +50 more
core   +1 more source

The practice and promise of temporal genomics for measuring evolutionary responses to global change

Molecular Ecology Resources, EarlyView., 2023
Abstract Understanding the evolutionary consequences of anthropogenic change is imperative for estimating long‐term species resilience. While contemporary genomic data can provide us with important insights into recent demographic histories, investigating past change using present genomic data alone has limitations.
René D. Clark, Katrina A. Catalano, Kyra S. Fitz, Eric Garcia, Kyle E. Jaynes, Brendan N. Reid, Allyson Sawkins, Anthony A. Snead, John C. Whalen, Malin L. Pinsky   +9 more
wiley   +1 more source

Isolation and Characterization of 27 Microsatellite Markers for the Endemic Species Diplarche multiflora (Ericaceae)

Applications in Plant Sciences, 2013
Premise of the study: Microsatellite markers from the genome of Diplarche multiflora were developed and characterized to investigate its genetic diversity and population structure.
Lin Zhang, Zhi-Rong Zhang, Lian-Ming Gao
doaj   +1 more source

What Is a Microsatellite: A Computational and Experimental Definition Based upon Repeat Mutational Behavior at A/T and GT/AC Repeats [PDF]

, 2010
Microsatellites are abundant in eukaryotic genomes and have high rates of strand slippage-induced repeat number alterations. They are popular genetic markers, and their mutations are associated with numerous neurological diseases.
Amos, Amos, Baase, Baldi, Bebenek, Brandstrom, Brandstrom, Brinkmann, Britten, Buerger, Bulmer, Buschiazzo, Chen, Chu, Cox, Crothers, Cuppens, da Silva, de Wachter, Dechering, Denver, Dieringer, Eckert, Eckert, Eckert, Eckert, Eckert, Ellegren, Ellegren, Field, Francesca Chiaromonte, Garcia-Diaz, Gebhardt, Gordon, Gragg, Hammock, Hardison, Harfe, Hile, Hile, Hile, Huang, Hui, Iglesias, International HapMap Consortium, International HapMap Consortium, Kateryna D. Makova, Kelkar, Kim, Kristin A. Eckert, Kroutil, Kunkel, Kunkel, Kunkel, Lai, Laken, Leclercq, Legendre, Levinson, Li, Li, Martin, Meloni, Merkel, Messier, Molla, Mudunuri, Nadeau, Nishizawa, Noelle Strubczewski, Noor, Opresko, Pearson, Prasad, Pupko, Rajendran, Rhead, Rich, Rockman, Rose, Rosen, Ruggiero, Schlötterer, Shah, Sinden, Suzanne E. Hile, Swan, Sweasy, Tautz, Timsit, Timsit, Wagner, Watkins, Webster, Wierdl, Woodson, Yogeshwar D. Kelkar, Zhang, Zhu   +98 more
core   +2 more sources

Assembly of female and male hihi genomes (stitchbird; Notiomystis cincta) enables characterization of the W chromosome and resources for conservation genomics

Molecular Ecology Resources, EarlyView., 2023
Abstract A high‐quality reference genome can be a valuable resource for threatened species by providing a foundation to assess their evolutionary potential to adapt to future pressures such as environmental change. We assembled the genome of a female hihi (Notiomysits cincta), a threatened passerine bird endemic to Aotearoa New Zealand.
Sarah Bailey, Joseph Guhlin, Dinindu S. Senanayake, Phoebe Scherer, Patricia Brekke, John G. Ewen, Anna W. Santure, Annabel Whibley   +7 more
wiley   +1 more source

A comparison of procedures for analysing microsatellite (CA)-repeat polymorphisms

Molecular and Cellular Probes, 1992
Dinucleotide repeat sequences ('microsatellites') have been used as polymorphic genetic markers following amplification in the polymerase chain reaction (PCR). We have compared several methods of analysing the PCR products. The most reliable and unambiguous results were obtained when the PCR products were probed with a specific dinucleotide repeat ...
B.B. Cohen, D.N. Crichton, M.R. Wallace
openaire   +3 more sources

A new genomic resource to enable standardized surveys of SNPs across the native range of brook trout (Salvelinus fontinalis)

Molecular Ecology Resources, EarlyView., 2023
Abstract Understanding how genetic diversity is distributed across spatiotemporal scales in species of conservation or management concern is critical for identifying large‐scale mechanisms affecting local conservation status and implementing large‐scale biodiversity monitoring programmes.
Nadya R. Mamoozadeh, Andrew R. Whiteley, Benjamin H. Letcher, David C. Kazyak, Charlene Tarsa, Mariah H. Meek   +5 more
wiley   +1 more source

Characterization of Waxy microsatellite classes that are closely linked to the rice Waxy gene and amylose content in Thai rice germplasm [PDF]

Songklanakarin Journal of Science and Technology (SJST), 2003
Sixty-eight strains belonging to two species of Oryza were characterized by using Wx microsatellite, (CT)n repeats that are closely linked to the rice Waxy gene.
Preecha Prathepha
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