Results 21 to 30 of about 4,016,393 (242)

Computational strategies for PROTAC drug discovery

open access: yesActa Materia Medica, 2023
Proteolysis-targeting chimeras (PROTACs), a novel targeted protein degradation technology for potential clinical drug discovery, is composed of a protein-targeting ligand covalently linked to an E3 ligase ligand.
Jia Wu, Wanhe Wang, Chung-Hang Leung
doaj   +1 more source

Molecular Docking Study of Caffeic Acid as Acetylcholinesterase Inhibitor

open access: yesJournal of Food and Pharmaceutical Sciences, 2023
Acetylcholinesterase (AChE) receptor is a receptor that has been widely used as a potential drug target for Alzheimer's disease. Caffeic acid is a phenolic compound that had been experimentally proven to be an inhibitor of AChE.
Stephanus Satria Wira Waskitha   +2 more
doaj   +1 more source

Progress in molecular docking [PDF]

open access: yesQuantitative Biology, 2019
BackgroundIn recent years, since the molecular docking technique can greatly improve the efficiency and reduce the research cost, it has become a key tool in computer‐assisted drug design to predict the binding affinity and analyze the interactive mode.ResultsThis study introduces the key principles, procedures and the widely‐used applications for ...
Le Zhang, Jiyu Fan, Ailing Fu
openaire   +2 more sources

Encapsulation mechanism of α-mangostin by β-cyclodextrin: Methods of molecular docking and molecular dynamics

open access: yesJournal of Advanced Pharmaceutical Technology & Research, 2021
The study aimed to investigate the interaction of host-guest between α-mangostin and β-cyclodextrin (βCD) and also to calculate the energy of the complex system between α-mangostin with βCD for drug delivery using methods of 15 molecular dynamics and ...
Dian Triwahyuningtyas   +4 more
doaj   +1 more source

Integration of Molecular Docking Analysis and Molecular Dynamics Simulations for Studying Food Proteins and Bioactive Peptides.

open access: yesJournal of Agricultural and Food Chemistry, 2022
In silico tools, such as molecular docking, are widely applied to study interactions and binding affinity of biological activity of proteins and peptides.
A. Vidal-Limon   +2 more
semanticscholar   +1 more source

Molecular interaction analysis and visualization of protein-ligand docking using Biovia Discovery Studio Visualizer

open access: yesIndonesian Journal of Computational Biology (IJCB), 2023
Molecular docking interpretation is one of the crucial part before determining the result. Docking is commonly used to study the biomolecular interaction, usually for protein-ligand interaction, and to study about the molecular mechanism.
Umi Baroroh, S.Si., M.Biotek.   +4 more
semanticscholar   +1 more source

PacDOCK: A Web Server for Positional Distance-Based and Interaction-Based Analysis of Docking Results

open access: yesMolecules, 2022
Molecular docking is a key method for structure-based drug design used to predict the conformations assumed by small drug-like ligands when bound to their target.
Jacopo Carbone   +4 more
doaj   +1 more source

Benchmarking AlphaFold‐enabled molecular docking predictions for antibiotic discovery

open access: yesMolecular Systems Biology, 2022
Efficient identification of drug mechanisms of action remains a challenge. Computational docking approaches have been widely used to predict drug binding targets; yet, such approaches depend on existing protein structures, and accurate structural ...
Felix Wong   +7 more
semanticscholar   +1 more source

Ligand solvation in molecular docking [PDF]

open access: yesProteins: Structure, Function, and Genetics, 1999
Solvation plays an important role in ligand-protein association and has a strong impact on comparisons of binding energies for dissimilar molecules. When databases of such molecules are screened for complementarity to receptors of known structure, as often occurs in structure-based inhibitor discovery, failure to consider ligand solvation often leads ...
Brian K. Shoichet   +2 more
openaire   +2 more sources

Computational Exploration of Anti-cancer Potential of Flavonoids against Cyclin-Dependent Kinase 8: An In Silico Molecular Docking and Dynamic Approach

open access: yesACS Omega, 2022
Over the centuries, cancer has been considered one of the significant health threats. It holds the position in the list of deadliest diseases over the globe.
Sanket Rathod   +10 more
semanticscholar   +1 more source

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