Results 51 to 60 of about 4,185,495 (377)

Docking and Dynamics Study of Phytochemicals as Potent Inhibitors against SARS-CoV-2 Main Protease

open access: yesJournal of Molecular Docking, 2022
Coronavirus Infectious Disease-19 (COVID-19) caused by coronavirus 2 is a global health hazard. The lack of medications against the disease is a major concern of the research community today. Severe Acute Respiratory Syndrome Coronavirus 2 Main Protease (
Palla Ramprasad   +2 more
doaj   +1 more source

Potential Inhibitor of COVID-19 Main Protease (Mpro) From Several Medicinal Plant Compounds by Molecular Docking Study

open access: yes, 2020
COVID-19, a new strain of coronavirus (CoV), was identified in Wuhan, China, in 2019. No specific therapies are available and investigations regarding COVID-19 treatment are lacking. Liu et al. (2020) successfully crystallised the COVID-19 main protease (
Siti Khaerunnisa   +4 more
semanticscholar   +1 more source

Molecular Docking and Dynamics Studies to Explore Effective Inhibitory Peptides Against the Spike Receptor Binding Domain of SARS-CoV-2

open access: yesFrontiers in Molecular Biosciences, 2022
The spread of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) has become a pandemic due to the high transmission and mortality rate of this virus.
Suvro Biswas   +10 more
semanticscholar   +1 more source

Software for molecular docking: a review [PDF]

open access: yesBiophysical Reviews, 2017
Molecular docking methodology explores the behavior of small molecules in the binding site of a target protein. As more protein structures are determined experimentally using X-ray crystallography or nuclear magnetic resonance (NMR) spectroscopy, molecular docking is increasingly used as a tool in drug discovery.
Nataraj Sekhar Pagadala   +3 more
openaire   +2 more sources

Computational structure‐based drug design: Predicting target flexibility [PDF]

open access: yes, 2018
The role of molecular modeling in drug design has experienced a significant revamp in the last decade. The increase in computational resources and molecular models, along with software developments, is finally introducing a competitive advantage in early
Ding X.   +4 more
core   +2 more sources

Probing molecular docking problem by an improved quantum-behaved particle swarm optimization algorithm

open access: yesJournal of Algorithms & Computational Technology, 2019
The main objective of molecular docking is to find a model of interaction between a protein and ligand with a minimum binding energy. This process is driven by intricate algorithms and scoring functions.
Yi Fu, Juan Mei, Ji Zhao
doaj   +1 more source

Introducing a two‐dimensional graph of docking score difference vs. similarity of ligand‐receptor interactions

open access: yesIndonesian Journal of Biotechnology, 2021
Observation of molecular docking results was generally performed by analyzing the docking score and the interacting amino acid residues separately either in tables or graphs.
Mohammad Rizki Fadhil Pratama   +2 more
doaj   +1 more source

The Impact of D614G Mutation of SARS-COV-2 on the Efficacy of Anti-viral Drugs: A Comparative Molecular Docking and Molecular Dynamics Study

open access: yesCurrent Microbiology, 2022
D614G is one of the most reported mutations in the spike protein of SARS-COV-2 that has altered some crucial characteristics of coronaviruses, such as rate of infection and binding affinities.
Alireza Poustforoosh   +7 more
semanticscholar   +1 more source

A Novel Scoring Based Distributed Protein Docking Application to Improve Enrichment [PDF]

open access: yes, 2015
Molecular docking is a computational technique which predicts the binding energy and the preferred binding mode of a ligand to a protein target. Virtual screening is a tool which uses docking to investigate large chemical libraries to identify ligands ...
Merrill, Stephen   +4 more
core   +2 more sources

In Silico Approach: Effect of the Oxidation Iron State (Heme-Group) in Steroidogenesis Pathways

open access: yesJournal of Molecular Docking, 2022
One of the main design features of enzyme regulators for the CYPs is the presence of a heme-group and different oxidation states in iron atoms. The selective inhibition of a CYP-enzyme can help to reduce the formation of steroidal molecules that causes ...
David Mora-Martinez   +4 more
doaj   +1 more source

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