ProPIP: a tool for progressive multiple sequence alignment with Poisson Indel Process. [PDF]
BMC Bioinformatics, 2021 Maiolo M +5 more
europepmc +1 more source
PacRAT: a program to improve barcode-variant mapping from PacBio long reads using multiple sequence alignment. [PDF]
Bioinformatics, 2022 Yeh CC +3 more
europepmc +1 more source
Relative model selection of evolutionary substitution models can be sensitive to multiple sequence alignment uncertainty. [PDF]
BMC Ecol Evol, 2021 Spielman SJ, Miraglia ML.
europepmc +1 more source
Fast multiple alignment of ungapped DNA sequences using information theory and a relaxation method
, 1996 Thomas D. Schneider +1 more
openalex +1 more source
Mauve: Multiple Alignment of Conserved Genomic Sequence With Rearrangements [PDF]
, 2004 Aaron E. Darling +3 more
openalex +1 more source
MUSCLE: a multiple sequence alignment method with reduced time and space complexity [PDF]
, 2004 R. C. Edgar
openalex +1 more source
Mulan: Multiple-sequence local alignment and visualization for studying function and evolution [PDF]
, 2004 Ivan Ovcharenko +7 more
openalex +1 more source
Scalable long read self-correction and assembly polishing with multiple sequence alignment. [PDF]
Sci Rep, 2021 Morisse P +4 more
europepmc +1 more source
3DCoffee@igs: a web server for combining sequences and structures into a multiple sequence alignment [PDF]
, 2004 Olivier Poirot +4 more
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Multiple sequence alignment for short sequences
, 2015 Multiple sequence alignment (MSA) has been one of the most important problems in bioinformatics for more decades and it is still heavily examined by many mathematicians and biologists. However, mostly because of the practical motivation of this problem, the research on this topic is focused on aligning long sequences.
openaire +2 more sources