Results 21 to 30 of about 1,397 (172)

Genomic and biogeographic characterisation of the novel prasinovirus Mantoniella tinhauana virus 1. [PDF]

Environ Microbiol Rep
Phylogenetic tree, virion morphology and global metagenomic abundance of Mantoniella tinhauana virus 1, a newly isolated and characterised prasinovirus. Abstract Mamiellophyceae are a ubiquitous class of unicellular green algae in the global ocean.
Rey Redondo E, Leung SKK, Yung CCM.
europepmc   +2 more sources

Quantitative assessment of NCLDV–host interactions predicted by co-occurrence analyses [PDF]

, 2020
AbstractNucleocytoplasmic DNA viruses (NCLDVs) are highly diverse and abundant in marine environments. However, knowledge of their hosts is limited because only a few NCLDVs have been isolated so far. Taking advantage of the recent large-scale marine metagenomics census,in silicohost prediction approaches are expected to fill the gap and further expand
Lingjie Meng, Hisashi Endo, Romain Blanc-Mathieu, Samuel Chaffron, Rodrigo Hernández-Velázquez, Hiroto Kaneko, Hiroyuki Ogata   +6 more
openaire   +1 more source

Metatranscriptomics reveals a shift in microbial community composition and function during summer months in a coastal marine environment

Environmental DNA, Volume 5, Issue 5, Page 920-933, September 2023., 2023
The composition and microbial activity of marine water is expected to vary with seasons and abiotic variables. To characterize both the microbial compositional and functional changes associated with abiotic factors such as pH, temperature, alkalinity, aragonite, calcite and pCO2, here we generate a reference metatranscriptome from the Strait of Georgia,
Ben J. G. Sutherland, Jan F. Finke, Robert Saunders, Snehal Warne, Angela D. Schulze, Jeff H. T. Strohm, Amy M. Chan, Curtis A. Suttle, Kristina M. Miller   +8 more
wiley   +1 more source

Informational gene phylogenies do not support a fourth domain of life for nucleocytoplasmic large DNA viruses. [PDF]

PLoS ONE, 2011
Mimivirus is a nucleocytoplasmic large DNA virus (NCLDV) with a genome size (1.2 Mb) and coding capacity ( 1000 genes) comparable to that of some cellular organisms.
Tom A Williams, T Martin Embley, Eva Heinz   +2 more
doaj   +1 more source

Tracing the Origin of Genotype II African Swine Fever Virus in China by Genomic Epidemiology Analysis

Transboundary and Emerging Diseases, Volume 2023, Issue 1, 2023., 2023
The pandemic spread of African swine fever (ASF) has caused serious effects on the global pig industry. Virus genome sequencing and genomic epidemiology analysis play an important role in tracking the outbreaks of the disease and tracing the transmission of the virus.
Yong Zhang, Qinghua Wang, Zhongyi Zhu, Shujuan Wang, Shuyang Tu, Yongqiang Zhang, Yanli Zou, Yutian Liu, Chunju Liu, Weijie Ren, Dongxia Zheng, Yunling Zhao, Yongxin Hu, Lin Li, Chuan Shi, Shengqiang Ge, Peng Lin, Fengping Xu, Jinmin Ma, Xiaodong Wu, Hongchao Ma, Zhiliang Wang, Jingyue Bao, Jordi Casal   +23 more
wiley   +1 more source

Bacteriophages pass through candle‐shaped porous ceramic filters: Application for the collection of viruses in soil water

MicrobiologyOpen, Volume 11, Issue 5, October 2022., 2022
This study proposes to use porous candles as a new tool for collecting soil water viruses. In the first step, the passage of model viruses through the ceramic part of the candles was investigated. Regarding the field application, the experiments carried out showed a successful recovery of viruses, demonstrating the relevance and efficiency of such a ...
Perrine Florent, Henry‐Michel Cauchie, Malte Herold, Leslie Ogorzaly   +3 more
wiley   +1 more source

A distinct lineage of giant viruses brings a rhodopsin photosystem to unicellular marine predators. [PDF]

, 2019
Giant viruses are remarkable for their large genomes, often rivaling those of small bacteria, and for having genes thought exclusive to cellular life.
Bachy, Charles, Choi, Chang Jae, DeLong, Edward F, Hehenberger, Elisabeth, Hosaka, Toshiaki, Irwin, Nicholas AT, Iwasaki, Wataru, Keeling, Patrick J, Kimura-Someya, Tomomi, Kojima, Keiichi, Kurihara, Rika, Leonard, Guy, Malmstrom, Rex R, Mende, Daniel R, Nakajima, Yu, Needham, David M, Olson, Daniel K, Poirier, Camille, Richards, Thomas A, Santoro, Alyson E, Shirouzu, Mikako, Sudek, Sebastian, Sudo, Yuki, Wilken, Susanne, Worden, Alexandra Z, Yoshizawa, Susumu, Yung, Cheuk-Man   +26 more
core   +7 more sources

Exploring nucleo-cytoplasmic large DNA viruses in Tara Oceans microbial metagenomes [PDF]

, 2013
Nucleo-cytoplasmic large DNA viruses (NCLDVs) constitute a group of eukaryotic viruses that can have crucial ecological roles in the sea by accelerating the turnover of their unicellular hosts or by causing diseases in animals. To better characterize the
Acinas, Silvia G., Bork, Peer, Claverie, Jean-Michel, Clerissi, Camille, de Vargas, Colomban, Department of Applied Biological Sciences (DBIT), Vrije Universiteit Brussel, Brussels, Belgium, Department of Applied Biological Sciences (DBIT), Vrije Universiteit Brussel, Brussels, Belgium, Department of Applied Biological Sciences (DBIT), Vrije Universiteit Brussel, Brussels, Belgium, Desdevises, Yves, Faust, Karoline, Ferrera, Isabel, Grimsley, Nigel, Hingamp, Pascal, Jaillon, Olivier, Kandels-Lewis, Stefanie, Karsenti, Eric, Lima-Medez, Gipsi, Moreau, Hervé, Not, Fabrice, Ogata, Hiroyuki, Pesant, Stéphane, Poulain, Julie, Raes, Jeroen, Sarmento, Hugo, Subirana, Lucie, Sunagawa, Shinichi, Villar, Emilie, Wincker, Patrick   +27 more
core   +1 more source

A comparative study of flow cytometry‐sorted communities and shotgun viral metagenomics in a Singapore municipal wastewater treatment plant

iMeta, Volume 1, Issue 3, September 2022., 2022
This study elucidates the practical protocol of applying fluorescence‐activated cell sorting (FACS) and metagenomics on DNA and RNA viromes. This is the first systematic analysis of viral metagenomics in a municipal wastewater treatment plant with the Modified Ludzack–Ettinger (MLE) process.
Xiaoqiong Gu, Yi Yang, Feijian Mao, Wei Lin Lee, Federica Armas, Fang You, David M. Needham, Charmaine Ng, Hongjie Chen, Franciscus Chandra, Karina Yew‐Hoong Gin   +10 more
wiley   +1 more source

A Glimpse of Nucleo-Cytoplasmic Large DNA Virus Biodiversity through the Eukaryotic Genomics Window

Viruses, 2017
The nucleocytoplasmic large DNA viruses (NCLDV) are a group of extremely complex double-stranded DNA viruses, which are major parasites of a variety of eukaryotes. Recent studies showed that certain eukaryotes contain fragments of NCLDV DNA integrated in
Lucie Gallot-Lavallée, Guillaume Blanc
doaj   +1 more source