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Establishing a University Grid for HPC Applications [PDF]
This thesis documents a project undertaken at the University of Huddersfield between October 2009 and August 2010 to setup a High Performance Computing (HPC) resource, which would serve the University’s research community by providing a robust computing ...
Kureshi, Ibad
core +5 more sources
The identification of the genomic sequence of the breakpoint flanking regions of the fusion gene translocation was sequenced by next-generation sequencing (NGS)
Zhong Chen, (14001781) +2 more
core +1 more source
The contribution of genetic factors to development of neurological diseases has long been recognized, and the majority of the advances coupled to using molecular genetic technologies resulted in identifying genes associated with the pathology of ...
T. V. Kozhanova
doaj +1 more source
Course material NGS: genome variant analysis
GitHub for the SIB courses NGS - Genome variant ...
Geert van Geest, Patricia Palagi
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The United States Food and Drug Administration (FDA) recently approved the clinical use of two comprehensive ‘mid-size’ Next Generation Sequencing (NGS) panels calling actionable genomic aberrations in cancer.
Matteo Allegretti +7 more
doaj +1 more source
SCHOOL: Software for Clinical Health in Oncology for Omics Laboratories
Bioinformatics analysis is a key element in the development of in-house next-generation sequencing assays for tumor genetic profiling that can include both tumor DNA and RNA with comparisons to matched-normal DNA in select cases.
Chelsea K Raulerson +6 more
doaj +1 more source
fmalmeida/ngs-preprocess: fmalmeida/ngs-preprocess v2.3
The pipeline <p>ngs-preprocess is built using <a href="https://www.nextflow.io/">Nextflow</a>, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner.
Felipe Marques de Almeida
core +1 more source
Analysis of Small RNAs of Barley Genotypes Associated with Resistance to Barley Yellow Dwarf Virus
Barley yellow dwarf virus (BYDV) causes an often-devastating disease of cereals that is most effectively controlled by using plant genotypes that are resistant or tolerant to the virus. New barley lines Vir8:3 and Vir13:8, with pyramided resistance genes
Jana Jarošová +3 more
doaj +1 more source
fmalmeida/ngs-preprocess: A pipeline for preprocessing short and long sequencing reads
The pipeline ngs-preprocess is built using Nextflow, a workflow tool to run tasks across multiple compute infrastructures in a very portable manner. It uses Docker/Singularity containers making installation trivial and results highly reproducible. It is
Felipe Marques de Almeida +1 more
core +2 more sources

