Results 31 to 40 of about 386,400 (307)

MarkerMiner 1.0: a new application for phylogenetic marker development using angiosperm transcriptomes [PDF]

, 2015
Premise of the study: Targeted sequencing using next-generation sequencing (NGS) platforms offers enormous potential for plant systematics by enabling economical acquisition of multilocus data sets that can resolve difficult phylogenetic problems ...
Berbazuk, W Brad, Chamala, Srikar, De Smet, Riet, García, Nicolás, Godden, Grant T, Jordon-Thaden, Ingrid E, Krishnakumar, Vivek, Soltis, Douglas E, Soltis, Pamela S   +8 more
core   +3 more sources

Rapid, ultra low coverage copy number profiling of cell-free DNA as a precision oncology screening strategy. [PDF]

, 2017
Current cell-free DNA (cfDNA) next generation sequencing (NGS) precision oncology workflows are typically limited to targeted and/or disease-specific applications.
Alva, Ajjai S, Brockman, Scott, Chinnaiyan, Arul M, Chugh, Rashmi, Feng, Felix Y, Grasso, Catherine S, Gursky, Amy, Haakenson, Christine, Henderson, James, Herman, Kirk, Hovelson, Daniel H, Husain, Hatim, Hussain, Maha H, Kamberov, Emmanuel, Kandarpa, Malathi, Kang, Qing, Krauss, John C, Langmore, John, Liu, Chia-Jen, Lonigro, Robert J, Mills, Ryan E, Morgan, Todd M, Quist, Michael J, Ramnath, Nithya, Robinson, Dan, Smith, David C, Talpaz, Moshe, Tesmer, Tim, Tewari, Muneesh, Tomlins, Scott A, Tuck, Missy, Wang, Yugang   +31 more
core   +1 more source

Pathogen Genomic Surveillance and Bioinformatics Training and Capacity Development Across Africa

International Journal of Infectious Diseases
Introduction: The recent emergence and re-emergence of infectious diseases across Africa have emphasised the critical need for vigorous pathogen genomic surveillance systems on the continent.
Ms Siddiqah George, Ms Kirsty Lee Garson, Mr Tony Yiquan Li, Mr Perceval Maturure, Professor Nicola Mulder   +4 more
doaj   +1 more source

Identification, Molecular and Phylogenetic Characterization of Two Isolates of vinca mosaic virus Based on p1 and cp Genes [PDF]

پژوهش‌های حفاظت گیاهان ایران
Introduction Vinca minor or lesser periwinkle is a perennial, herbaceous and creeping plant belonging to the genus Vinca and the family Apocynaceae. In addition to being an ornamental and cover plant, V.
Sorya Turang, Mohsen Mehrvar, Mohammad Zakiaghl   +2 more
doaj   +1 more source

The complete chloroplast genome of the Egyptian henbane (Hyoscyamus muticus L., Solanaceae)

Mitochondrial DNA. Part B. Resources, 2022
Egyptian henbane (Hyoscyamus muticus L. Mant. Pl. 1767) is an important medicinal plant of the family Solanaceae. Its complete chloroplast (cp) genome was assembled using Illumina high-throughput sequencing technology to contribute to its conservation ...
Mahmoud Magdy, Esraa Attia El-Sherbeny, Agripina Ramirez Sanchez   +2 more
doaj   +1 more source

Seq2scFv: a toolkit for the comprehensive analysis of display libraries from long-read sequencing platforms

mAbs
Antibodies have emerged as the leading class of biotherapeutics, yet traditional screening methods face significant time and resource challenges in identifying lead candidates.
Marianne Bachmann Salvy, Luca Santuari, Emanuel Schmid-Siegert, Nikolaos Lykoskoufis, Ioannis Xenarios, Bulak Arpat   +5 more
doaj   +1 more source

Accurate Adapter Information Is Crucial for Reproducibility and Reusability in Small RNA Seq Studies

Non-Coding RNA, 2019
A necessary pre-processing data analysis step is the removal of adapter sequences from the raw reads. While most adapter trimming tools require adapter sequence as an essential input, adapter information is often incomplete or missing.
Xiangfu Zhong, Fatima Heinicke, Benedicte A. Lie, Simon Rayner   +3 more
doaj   +1 more source

Complete mitochondrial genome of nearly threatened freshwater ornamental fish, Microphis deocata and its phylogenetic relationship within Syngnathidae

Mitochondrial DNA. Part B. Resources, 2021
Microphis deocata (deocata pipefish), belonging to family Syngnathidae, is one of the important indigenous ornamental fish species listed as near threatened in the IUCN red list. Here, we first report the complete mitochondrial genome of deocata pipefish
Lakshman Sahoo, Ashoktaru Barat, Paramananda Das, Bismay Sahoo, Gargee Das, Jitendra. K. Sundaray, Sangram K. Sahoo, Saroj K. Swain, Khuntia Murmu, Dandadhar Sarma   +9 more
doaj   +1 more source

A normalization technique for next generation sequencing experiments [PDF]

, 2010
Next generation sequencing (NGS) are these days one of the key technologies in biology. NGS' cost effectiveness and capability of finding the smallest variations in the genome makes them increasingly popular.
Andreas Mayr, Günter Klambauer, Günter Klambauer, Karin Schwarzbauer, Sepp Hochreiter   +4 more
core   +3 more sources

ForestQC: Quality control on genetic variants from next-generation sequencing data using random forest. [PDF]

, 2019
Next-generation sequencing technology (NGS) enables the discovery of nearly all genetic variants present in a genome. A subset of these variants, however, may have poor sequencing quality due to limitations in NGS or variant callers.
Coppola, Giovanni, Freimer, Nelson B, Hwang, Sungoo, Jew, Brandon, Li, Jiajin, Sul, Jae Hoon, Zhan, Lingyu   +6 more
core   +1 more source