Results 111 to 120 of about 780,027 (226)

Full-length transcriptome reconstruction reveals a large diversity of RNA and protein isoforms in rat hippocampus

Nature Communications, 2019
It is challenging to characterize diverse transcript isoforms by short-read sequencing. Here the authors report full-length transcriptomes in rat hippocampus by hybrid-sequencing, predict isoform-specific translational status, and reconstruct open ...
Xi Wang, Xintian You, Julian D. Langer, Jingyi Hou, Fiona Rupprecht, Irena Vlatkovic, Claudia Quedenau, Georgi Tushev, Irina Epstein, Bernhard Schaefke, Wei Sun, Liang Fang, Guipeng Li, Yuhui Hu, Erin M. Schuman, Wei Chen   +15 more
doaj   +1 more source

Filtering "genic" open reading frames from genomic DNA samples for advanced annotation

BMC Genomics, 2011
Background In order to carry out experimental gene annotation, DNA encoding open reading frames (ORFs) derived from real genes (termed "genic") in the correct frame is required.
Sblattero Daniele, Santoro Claudio, Mignone Flavio, Velappan Nileena, D'Angelo Sara, Kiss Csaba, Bradbury Andrew RM   +6 more
doaj   +1 more source

Direct Detection of Alternative Open Reading Frames Translation Products in Human Significantly Expands the Proteome

PLoS ONE, 2013
A fully mature mRNA is usually associated to a reference open reading frame encoding a single protein. Yet, mature mRNAs contain unconventional alternative open reading frames (AltORFs) located in untranslated regions (UTRs) or overlapping the reference ...
Benoît Vanderperre, Jean-François Lucier, Cyntia Bissonnette, J. Motard, Guillaume Tremblay, Solene Vanderperre, M. Wisztorski, M. Salzet, F. Boisvert, X. Roucou   +9 more
semanticscholar   +1 more source

Quantitative sequence and open reading frame analysis based on codon bias [PDF]

Journal of Systemics, Cybernetics and Informatics, 2006
The frequencies with which the sixty-four codons occur in human coding DNA are known. If we assume that the codons occur randomly, subject only to these probabilities, then it is possible to predict trinucleotide frequencies in each of the five other ...
Susan Rainey, Joe Repka
doaj  

open reading frame

Citation: 'open reading frame' in the IUPAC Compendium of Chemical Terminology, 5th ed.; International Union of Pure and Applied Chemistry; 2025. Online version 5.0.0, 2025. 10.1351/goldbook.09713 • License: The IUPAC Gold Book is licensed under Creative Commons Attribution-ShareAlike CC BY-SA 4.0 International for individual terms.
openaire   +1 more source

Genetic Locus and Structural Characterization of the Biochemical Defect in the O-Antigenic Polysaccharide of the Symbiotically Deficient \u3cem\u3eRhizobium etli\u3c/em\u3e Mutant, CE166 [PDF]

, 2003
The O-antigen polysaccharide (OPS) of Rhizobium etli CE3 lipopolysaccharide (LPS) is linked to the core oligosaccharide via an N-acetylquinovosaminosyl (QuiNAc) residue.
Box, Jodie M., Carlson, Russell W, Forsberg, Lennart Scott, Noel, K. Dale   +3 more
core   +1 more source

Cytoplasmic Male Sterility-Associated Chimeric Open Reading Frames Identified by Mitochondrial Genome Sequencing of Four Cajanus Genotypes

DNA Research, 2013
The hybrid pigeonpea (Cajanus cajan) breeding technology based on cytoplasmic male sterility (CMS) is currently unique among legumes and displays major potential for yield increase.
Reetu Tuteja, R. Saxena, Jaime I. Davila, T. Shah, Wenbin Chen, Yongli Xiao, Guangyi Fan, K. Saxena, Andrew J. Alverson, C. Spillane, C. Town, R. Varshney   +11 more
semanticscholar   +1 more source

Dual Short Upstream Open Reading Frames Control Translation of a Herpesviral Polycistronic mRNA

PLoS Pathogens, 2013
The Kaposi's sarcoma-associated herpesvirus (KSHV) protein kinase, encoded by ORF36, functions to phosphorylate cellular and viral targets important in the KSHV lifecycle and to activate the anti-viral prodrug ganciclovir.
L. Kronstad, Kevin F. Brulois, Jae U. Jung, B. Glaunsinger   +3 more
semanticscholar   +1 more source

How antisense transcripts can evolve to encode novel proteins

Nature Communications
Protein coding features can emerge de novo in non coding transcripts, resulting in emergence of new protein coding genes. Studies across many species show that a large fraction of evolutionarily novel non-coding RNAs have an antisense overlap with ...
Bharat Ravi Iyengar, Anna Grandchamp, Erich Bornberg-Bauer   +2 more
doaj   +1 more source

Gene organization of the dnaA region of Wolbachia [PDF]

, 1998
The dnaA region of Wolbachia, an intracellular bacterial parasite of insects, is unique. A glnA cognate was found upstream of the dnaA gene, while neither of the two open reading frames detected downstream of dnaA has any homologue in the database.
Sun, Ling V., Babaratsas, Alekos, Savakis, Charalambos, O'Neill, Scott L., Bourtzis, Kostas   +4 more
core   +1 more source