Results 21 to 30 of about 135,056 (273)
Frontiers in Microbiology, 2023 IntroductionFeo is the most widespread and conserved system for ferrous iron uptake in bacteria, and it is important for virulence in several gastrointestinal pathogens. However, its mechanism remains poorly understood.
Camilo Gómez-Garzón +2 more
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FADU: a Quantification Tool for Prokaryotic Transcriptomic Analyses
mSystems, 2021 Quantification tools for RNA sequencing (RNA-Seq) analyses are often designed and tested using human transcriptomics data sets, in which full-length transcript sequences are well annotated.
Matthew Chung +10 more
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Microorganisms, 2020 Operons are a dominant feature of bacterial and archaeal genome organization. Numerous investigations have related aspects of operon structure to operon function, making operons exemplars for studies aimed at deciphering Nature’s design principles for ...
Phillip Seitzer +3 more
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Operon-SEQer ensemble tested against new data sets.
, 2022 Recall (blue) and specificity (red) of the Operon-SEQer ensemble with algorithm agreement cutoffs of 1–6 for operon pair calls for the new data set from (A) B. subtilis, (B) P. syringiae, and (C) M. tuberculosis. (TIF)
Raga Krishnakumar (11909990) +1 more
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, 2022 (A) AUC scores of OperonSEQer operon pair calls on MicrobesOnline E.coli operons, and both OperonSEQer and MicrobesOnline operon pair calls on SMRT-seq E.coli operons.
Raga Krishnakumar (11909990) +1 more
core +1 more source
Operon-SEQer features and performance across the various algorithms used.
, 2022 (A) Spearman’s correlation coefficients between the features considered for use in machine learning and operon pair calls made by MicrobesOnline across 7-species (see main text). KW = Kruskal Wallis statistic.
Raga Krishnakumar (11909990) +1 more
core +1 more source
Evaluation of Biofilm Formation and Presence of Genes in Clinical Isolates [PDF]
Osong Public Health and Research Perspectives, 2018 Objectives Biofilm formation is one of the important features of Staphylococcus epidermidis, particularly in nosocomial infections. We aimed to investigate the biofilm production by phenotypic methods and the presence of ica genes in S epidermidis ...
Maryam Kord +5 more
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Briefings in Functional Genomics and Proteomics, 2004 It was thought that polycistronic transcription is a characteristic of bacteria and archaea, where many of the genes are clustered in operons composed of two to more than ten genes. By contrast, the genes of eukaryotes are generally considered to be monocistronic, each with its own promoter at the 5' end and a transcription terminator at the 3' end ...
openaire +2 more sources
Fate of the H-NS-repressed bgl operon in evolution of Escherichia coli. [PDF]
, 2009 In the enterobacterial species Escherichia coli and Salmonella enterica, expression of horizontally acquired genes with a higher than average AT content is repressed by the nucleoid-associated protein H-NS.
T Sabari Sankar +18 more
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Transcriptome Landscape of Mycobacterium smegmatis
Frontiers in Microbiology, 2017 The non-pathogenic bacterium Mycobacterium smegmatis mc2155 has been widely used as a model organism in mycobacterial research, yet a detailed study about its transcription landscape remains to be established. Here we report the transcriptome, expression
Xinfeng Li +8 more
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