Results 11 to 20 of about 2,919 (208)

Integrative Transcriptomic and Evolutionary Analysis of Drought and Heat Stress Responses in Solanum tuberosum and Solanum lycopersicum [PDF]

open access: yesPlants
Abiotic stresses such as drought and heat severely constrain the growth and productivity of Solanaceae crops, including potato (Solanum tuberosum L.) and tomato (Solanum lycopersicum L.), yet the conserved regulatory mechanisms underlying their stress ...
Eugeniya I. Bondar   +3 more
doaj   +2 more sources

Type IV minor pilin ComN predicted the USS-receptor in Pasteurellaceae [PDF]

open access: yesFrontiers in Microbiology
The Uptake Signal Sequence (USS) receptor, which facilitates the acquisition of homologous DNA by natural transformation in Haemophilus influenzae and other members of the Pasteurellaceae, remains unknown.
Stian Aleksander Helsem   +5 more
doaj   +2 more sources

Analysis of Carica papaya Informs Lineage-Specific Evolution of the Aquaporin (AQP) Family in Brassicales

open access: yesPlants, 2023
Aquaporins (AQPs), a type of intrinsic membrane proteins that transport water and small solutes across biological membranes, play crucial roles in plant growth and development.
Zhi Zou, Yujiao Zheng, Zhengnan Xie
doaj   +1 more source

NGSEP 4: Efficient and accurate identification of orthogroups and whole‐genome alignment [PDF]

open access: yesMolecular Ecology Resources, 2022
Abstract Whole‐genome alignment allows researchers to understand the genomic structure and variation among genomes. Approaches based on direct pairwise comparisons of DNA sequences require large computational capacities. As a consequence, pipelines combining tools for orthologous gene identification and synteny have been developed. In
Daniel Tello   +13 more
openaire   +2 more sources

Genomic Analysis of LEA Genes in Carica papaya and Insight into Lineage-Specific Family Evolution in Brassicales

open access: yesLife, 2022
Late embryogenesis abundant (LEA) proteins comprise a diverse superfamily involved in plant development and stress responses. This study presents a first genome-wide analysis of LEA genes in papaya (Carica papaya L., Caricaceae), an economically ...
Zhi Zou   +4 more
doaj   +1 more source

Basis reduction for cryptogroups and orthogroups [PDF]

open access: yesSemigroup Forum, 2020
zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Casimiro, Ana, Skapinakis, Eduardo
openaire   +2 more sources

Hyperdecidability of pseudovarieties of orthogroups [PDF]

open access: yesGlasgow Mathematical Journal, 2001
Let W denote the intersection with the pseudovariety of completely regular semigroups of the Mal'cev product of the pseudovariety of bands with a pseudovariety V of completely regular semigroups. It is shown that the (pseudo)word problem for W is reduced to that for V in such a way that decidability is preserved in the case in which terms involving ...
Almeida, Jorge, Trotter, Peter G.
openaire   +2 more sources

orthogroup overlaps

open access: yes, 2023
<p>orthogroup overlaps</p ...
Gibson, William
core   +1 more source

ORTHOSCOPE: an automatic web tool for phylogenetically inferring bilaterian orthogroups with user-selected taxa [PDF]

open access: yesMolecular Biology and Evolution, 2018
Web tool: We developed a web tool named ORTHOSCOPE to identify orthogroups of specific molecules within major bilaterian lineages. ORTHOSCOPE allows users to employ several sequences of a specific molecule and a user-specified species tree as queries. A test analysis using data from 36 bilaterians was accomplished within 140 seconds.
Jun Inoue, Noriyuki Satoh
openaire   +7 more sources

Gene counts per species for each orthogroup

open access: yes, 2021
Gene counts per species for each orthogroup generated with an OrthoFinder analysis using protein sequences from ten aphid ...
Stephen Byrne (602885)
core   +1 more source

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