Results 11 to 20 of about 3,202 (209)
Orthogroup-Based Comparative Analysis of Prophage Gene Content in Candidatus Liberibacter Asiaticus Supports a Predominantly Conserved Global Repertoire with Limited Accessory Variation [PDF]
International Journal of Molecular SciencesHuanglongbing, a destructive citrus disease of global importance that is also present in Saudi Arabia, is associated with Candidatus Liberibacter asiaticus (CLas) and remains a major threat to citrus production. Although previous studies have documented sequence variation and prophage polymorphism in CLas, broader comparisons of prophage-associated ...
Ibrahim Y E +2 more
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OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy [PDF]
Genome Biology, 2015 AbstractIdentifying homology relationships between sequences is fundamental to biological research. Here we provide a novel orthogroup inference algorithm called OrthoFinder that solves a previously undetected gene length bias in orthogroup inference, resulting in significant improvements in accuracy.
Emms, D, Kelly, S
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OrthoML2GO: homology-based protein function prediction using orthogroups and machine learning
Вавиловский журнал генетики и селекцииIn recent years, the rapid growth of sequencing data has exacerbated the problem of functional annotation of protein sequences, as traditional homology-based methods face limitations when working with distant homologs, making it difficult to accurately ...
E. V. Malyugin, D. A. Afonnikov
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Applications in Plant SciencesPremise Orthology inference is crucial for comparative genomics, and multiple algorithms have been developed to identify putative orthologs for downstream analyses.
Irene T. Liao +3 more
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Molecular Ecology Resources, 2022 Abstract Whole‐genome alignment allows researchers to understand the genomic structure and variation among genomes. Approaches based on direct pairwise comparisons of DNA sequences require large computational capacities. As a consequence, pipelines combining tools for orthologous gene identification and synteny have been developed. In
Daniel Tello +13 more
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Plants, 2023 Aquaporins (AQPs), a type of intrinsic membrane proteins that transport water and small solutes across biological membranes, play crucial roles in plant growth and development.
Zhi Zou, Yujiao Zheng, Zhengnan Xie
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Basis reduction for cryptogroups and orthogroups [PDF]
Semigroup Forum, 2020 zbMATH Open Web Interface contents unavailable due to conflicting licenses.
Casimiro, Ana, Skapinakis, Eduardo
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Hyperdecidability of pseudovarieties of orthogroups [PDF]
Glasgow Mathematical Journal, 2001 Let W denote the intersection with the pseudovariety of completely regular semigroups of the Mal'cev product of the pseudovariety of bands with a pseudovariety V of completely regular semigroups. It is shown that the (pseudo)word problem for W is reduced to that for V in such a way that decidability is preserved in the case in which terms involving ...
Almeida, Jorge, Trotter, Peter G.
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ORTHOSCOPE: an automatic web tool for phylogenetically inferring bilaterian orthogroups with user-selected taxa [PDF]
Molecular Biology and Evolution, 2018 Web tool: We developed a web tool named ORTHOSCOPE to identify orthogroups of specific molecules within major bilaterian lineages. ORTHOSCOPE allows users to employ several sequences of a specific molecule and a user-specified species tree as queries. A test analysis using data from 36 bilaterians was accomplished within 140 seconds.
Jun Inoue, Noriyuki Satoh
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