Results 31 to 40 of about 2,919 (208)

Additional file 6 of The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments

, 2021
Additional file 6 Expanded or contracted Artemia orthogroups compared to other Branchiopoda. Listed: Orthogroup ID, number of genes in this orthogroup in A. franciscana, D. pulex, L. arcticus, and E.
James S. Clegg (11368596), Stephanie De Vos (11368584), Peter Bossier (8020256), Parisa Norouzitallab (11368605), Stephane Rombauts (11368587), Gilbert Van Stappen (11368611), Tim De Meyer (11368608), Wannes Dermauw (11368590), Patrick Sorgeloos (11368593), Yves Van de Peer (11368614), Marnik Vuylsteke (19670), Filip Van Nieuwerburgh (11368602), Thomas Van Leeuwen (364016), Louis Coussement (10327937), Ziro Nambu (11368599)   +14 more
core   +1 more source

OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations

BMC Genomics, 2017
Background Complete and accurate annotation of sequenced genomes is of paramount importance to their utility and analysis. Differences in gene prediction pipelines mean that genome annotations for a species can differ considerably in the quality and ...
Michael P. Dunne, Steven Kelly
doaj   +1 more source

Additional file 8 of The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments

, 2021
Additional file 8 Expanded or contracted Artemia and H. dujardini orthogroups compared to other Arthropoda. Listed: Orthogroup ID, number of genes in this orthogroup in A.
James S. Clegg (11368596), Stephanie De Vos (11368584), Peter Bossier (8020256), Parisa Norouzitallab (11368605), Stephane Rombauts (11368587), Gilbert Van Stappen (11368611), Tim De Meyer (11368608), Wannes Dermauw (11368590), Patrick Sorgeloos (11368593), Yves Van de Peer (11368614), Marnik Vuylsteke (19670), Filip Van Nieuwerburgh (11368602), Thomas Van Leeuwen (364016), Louis Coussement (10327937), Ziro Nambu (11368599)   +14 more
core   +1 more source

Assembly and annotation of the Gossypium barbadense L. ‘Pima-S6’ genome raise questions about the chromosome structure and gene content of Gossypium barbadense genomes

BMC Genomics, 2023
Background Gossypium barbadense L. Pima cotton is known for its resistance to Fusarium wilt and for producing fibers of superior quality highly prized in the textile market.
Ricardo A. Chávez Montes, Mauricio Ulloa, Tammy Biniashvili, Arik Zackay, Nir Kfir, Damar Lopez-Arredondo, Luis Herrera-Estrella   +6 more
doaj   +1 more source

Additional file 9

, 2021
Appendix S9. (a) Orthogroup summary statistics; (b) Orthogroup annotations; (c) Count and percentage of orthogroups and proteins per orthogroup category (A-J).
Jana U'Ren (6029645), Mario Franco (10165166)   +1 more
core   +1 more source

Orthogroup functional annotations and effector candidates

, 2020
Functional annotations of all predicted proteins in a Parastagonospora nodorum pangenome.Orthogroups were predicted using ProteinOrtho, each gene is annotated with the P.
James K. Hane (10874387), Darcy Jones (657836)   +1 more
core   +1 more source

3. Comparative population transcriptomics in krill: orthogroups (FASTA, TSV files)

, 2023
This item contains a gzipped archive with ~13,000 orthogroups used to study molecular evolution in this project. Archive: krill.orthogroups.tar.gz Contents of archive (FILE,SIZE,SPECIES,SAMPLES,SNPs): - krill.proteinortho.tsv - the primary output ...
https://orcid.org/
core   +1 more source

Comparative transcriptomics analysis pipeline for the meta-analysis of phylogenetically divergent datasets (CoRMAP)

BMC Bioinformatics, 2022
Background Transcriptional regulation is a fundamental mechanism underlying biological functions. In recent years, a broad array of RNA-Seq tools have been used to measure transcription levels in biological experiments, in whole organisms, tissues, and ...
Yiru Sheng, R. Ayesha Ali, Andreas Heyland   +2 more
doaj   +1 more source

Orthogroup

, 2019
Text file containing all Orthogroup names and their corresponding contig names from the PAC and GOL ...
Francis Pan (6328262), Morgan Kelly (3283722), Joanna Griffiths (6328259)   +2 more
core   +1 more source

Non-synonymous and synonymous polymorphism in four lineages of P. oryzae.

, 2022
For each lineage, only orthogroups with sample size > = 4 were included in calculations. Lineage: lineage of origin of genomes used in calculations for each orthogroup. Orthogroup: orthogroup ID. N: sample size.
Joëlle Milazzo (3241791), Maud Thierry (13149938), Sandrine Cros-Arteil (433329), Pierre Gladieux (38299), Florian Charriat (13149941), Thomas Kroj (274072), Henri Adreit (3241800), Violaine Sella (13149950), Renaud Ioos (3727294), Sébastien Ravel (13149944), Elisabeth Fournier (209005), Sonia borron (13149947), Didier Tharreau (44528)   +12 more
core   +1 more source