Results 31 to 40 of about 3,202 (209)

Additional file 6 of The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments

, 2021
Additional file 6 Expanded or contracted Artemia orthogroups compared to other Branchiopoda. Listed: Orthogroup ID, number of genes in this orthogroup in A. franciscana, D. pulex, L. arcticus, and E.
James S. Clegg (11368596), Stephanie De Vos (11368584), Peter Bossier (8020256), Parisa Norouzitallab (11368605), Stephane Rombauts (11368587), Gilbert Van Stappen (11368611), Tim De Meyer (11368608), Wannes Dermauw (11368590), Patrick Sorgeloos (11368593), Yves Van de Peer (11368614), Marnik Vuylsteke (19670), Filip Van Nieuwerburgh (11368602), Thomas Van Leeuwen (364016), Louis Coussement (10327937), Ziro Nambu (11368599)   +14 more
core   +1 more source

OrthoFiller: utilising data from multiple species to improve the completeness of genome annotations

BMC Genomics, 2017
Background Complete and accurate annotation of sequenced genomes is of paramount importance to their utility and analysis. Differences in gene prediction pipelines mean that genome annotations for a species can differ considerably in the quality and ...
Michael P. Dunne, Steven Kelly
doaj   +1 more source

OrthoFinder: phylogenetic orthology inference for comparative genomics

Genome Biology, 2019
Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted gene trees, gene duplication events, the rooted species tree, and comparative
David M. Emms, Steven Kelly
doaj   +1 more source

Additional file 8 of The genome of the extremophile Artemia provides insight into strategies to cope with extreme environments

, 2021
Additional file 8 Expanded or contracted Artemia and H. dujardini orthogroups compared to other Arthropoda. Listed: Orthogroup ID, number of genes in this orthogroup in A.
James S. Clegg (11368596), Stephanie De Vos (11368584), Peter Bossier (8020256), Parisa Norouzitallab (11368605), Stephane Rombauts (11368587), Gilbert Van Stappen (11368611), Tim De Meyer (11368608), Wannes Dermauw (11368590), Patrick Sorgeloos (11368593), Yves Van de Peer (11368614), Marnik Vuylsteke (19670), Filip Van Nieuwerburgh (11368602), Thomas Van Leeuwen (364016), Louis Coussement (10327937), Ziro Nambu (11368599)   +14 more
core   +1 more source

Phylogenetic analyses for orthogroup-based classification of GDSL-type esterase/lipase (GELP) family in angiosperm representative species [PDF]

, 2021
Abstract GDSL-type esterase/lipase (GELP) enzymes have multiple functions in plants, spanning from developmental processes to the response to biotic and abiotic stresses. Genes encoding GELP belong to a large gene family with several tens to more than hundred members per angiosperm species.
Cenci Alberto, Concepción-Hernández Mairenys, Geert Angenon, Rouard Mathieu   +3 more
openaire   +1 more source

Orthogroup functional annotations and effector candidates

, 2020
Functional annotations of all predicted proteins in a Parastagonospora nodorum pangenome.Orthogroups were predicted using ProteinOrtho, each gene is annotated with the P.
James K. Hane (10874387), Darcy Jones (657836)   +1 more
core   +1 more source

Additional file 9

, 2021
Appendix S9. (a) Orthogroup summary statistics; (b) Orthogroup annotations; (c) Count and percentage of orthogroups and proteins per orthogroup category (A-J).
Jana U'Ren (6029645), Mario Franco (10165166)   +1 more
core   +1 more source

Orthogroup

, 2019
Text file containing all Orthogroup names and their corresponding contig names from the PAC and GOL ...
Francis Pan (6328262), Morgan Kelly (3283722), Joanna Griffiths (6328259)   +2 more
core   +1 more source

3. Comparative population transcriptomics in krill: orthogroups (FASTA, TSV files)

, 2023
This item contains a gzipped archive with ~13,000 orthogroups used to study molecular evolution in this project. Archive: krill.orthogroups.tar.gz Contents of archive (FILE,SIZE,SPECIES,SAMPLES,SNPs): - krill.proteinortho.tsv - the primary output ...
https://orcid.org/
core   +1 more source

Integrative Analysis of Oleosin Genes Provides Insights into Lineage-Specific Family Evolution in Brassicales

Plants
Oleosins (OLEs) are a class of small but abundant structural proteins that play essential roles in the formation and stabilization of lipid droplets (LDs) in seeds of oil crops.
Zhi Zou, Li Zhang, Yongguo Zhao
doaj   +1 more source