Results 21 to 30 of about 2,919 (208)
An Integrative Bioinformatic Analysis for Keratinase Detection in Marine-Derived Streptomyces
Marine Drugs, 2021 Keratinases present promising biotechnological applications, due to their ability to degrade keratin. Streptomyces appears as one of the main sources of these enzymes, but complete genome sequences of keratinolytic bacteria are still limited.
Ricardo Valencia +5 more
doaj +1 more source
Journal of Fungi, 2021 Phytopathogenic Ascomycota are responsible for substantial economic losses each year, destroying valuable crops. The present study aims to provide new insights into phytopathogenicity in Ascomycota from a comparative genomic perspective.
Daniel Peterson +3 more
doaj +1 more source
Supplementary item 8 - Transcription factor orthogroup trees
, 2021 The TF orthogroup protein-trees generated in this study (for the orthogroups OG0000000 > OG0000591). These are in Newick format and can be visualised in the reader's chosen tree-viewing platform such as iTOL (Letunic and Bork, 2019).
Karam B. Singh (11381577) +3 more
core +1 more source
A gene expression comparison of Trypanosoma brucei and Trypanosoma congolense in the bloodstream of the mammalian host reveals species-specific adaptations to density-dependent development. [PDF]
PLoS Neglected Tropical Diseases, 2018 In the bloodstream of mammalian hosts Trypanosoma brucei undergoes well-characterised density-dependent growth control and developmental adaptation for transmission. This involves the differentiation from proliferative, morphologically 'slender' forms to
Eleanor Silvester +2 more
doaj +1 more source
Methods in Ecology and Evolution, 2023 Abstract Transcriptome sequencing technologies have revolutionized the field of phylogenomics by facilitating the identification of homologous genes for species without whole genome sequences.
Jingting Shen +3 more
openaire +2 more sources
, 2023 Overlap between orthogroup-mapped genes and tissue lens and stress lens correlated genes with the GreenCut2 resource (Karpowicz).
Robert VanBuren (3584303) +24 more
core +1 more source
PhyloFisher: A phylogenomic package for resolving eukaryotic relationships.
PLoS Biology, 2021 Phylogenomic analyses of hundreds of protein-coding genes aimed at resolving phylogenetic relationships is now a common practice. However, no software currently exists that includes tools for dataset construction and subsequent analysis with diverse ...
Alexander K Tice +14 more
doaj +1 more source
, 2023 Nucleotide diversity (π), ratio of non-synonymous to synonymous nucleotide diversity (πN/πS), orthogroup frequency for MAX effectors, other secreted proteins, and other genes.
Jérôme Gracy (6464) +10 more
core +1 more source
OrthoFinder: phylogenetic orthology inference for comparative genomics
Genome Biology, 2019 Here, we present a major advance of the OrthoFinder method. This extends OrthoFinder’s high accuracy orthogroup inference to provide phylogenetic inference of orthologs, rooted gene trees, gene duplication events, the rooted species tree, and comparative
David M. Emms, Steven Kelly
doaj +1 more source
Phylogenetic analyses for orthogroup-based classification of GDSL-type esterase/lipase (GELP) family in angiosperm representative species [PDF]
, 2021 Abstract GDSL-type esterase/lipase (GELP) enzymes have multiple functions in plants, spanning from developmental processes to the response to biotic and abiotic stresses. Genes encoding GELP belong to a large gene family with several tens to more than hundred members per angiosperm species.
Cenci Alberto +3 more
openaire +1 more source