Results 21 to 30 of about 3,202 (209)

Gene counts per species for each orthogroup

, 2021
Gene counts per species for each orthogroup generated with an OrthoFinder analysis using protein sequences from ten aphid ...
Stephen Byrne (602885)
core   +1 more source

Supplementary item 8 - Transcription factor orthogroup trees

, 2021
The TF orthogroup protein-trees generated in this study (for the orthogroups OG0000000 > OG0000591). These are in Newick format and can be visualised in the reader's chosen tree-viewing platform such as iTOL (Letunic and Bork, 2019).
Karam B. Singh (11381577), Kar-Chun Tan (259577), Evan John (9926343), Richard P. Oliver (5572293)   +3 more
core   +1 more source

TransMCL enables the assembly of full‐length coding genes for collecting complete hierarchical orthogroups

Methods in Ecology and Evolution, 2023
Abstract Transcriptome sequencing technologies have revolutionized the field of phylogenomics by facilitating the identification of homologous genes for species without whole genome sequences.
Jingting Shen, Shengyu Zhou, Yamao Chen, Ji Qi   +3 more
openaire   +2 more sources

RedoxiBase: A database for ROS homeostasis regulated proteins

Redox Biology, 2019
We present a new database, specifically devoted to ROS homeostasis regulated proteins. This database replaced our previous database, the PeroxiBase, which was focused only on various peroxidase families.
Bruno Savelli, Qiang Li, Mark Webber, Achraf Mohamed Jemmat, Alexis Robitaille, Marcel Zamocky, Catherine Mathé, Christophe Dunand   +7 more
doaj   +1 more source

A gene expression comparison of Trypanosoma brucei and Trypanosoma congolense in the bloodstream of the mammalian host reveals species-specific adaptations to density-dependent development. [PDF]

PLoS Neglected Tropical Diseases, 2018
In the bloodstream of mammalian hosts Trypanosoma brucei undergoes well-characterised density-dependent growth control and developmental adaptation for transmission. This involves the differentiation from proliferative, morphologically 'slender' forms to
Eleanor Silvester, Alasdair Ivens, Keith R Matthews   +2 more
doaj   +1 more source

Categorization of Orthologous Gene Clusters in 92 Ascomycota Genomes Reveals Functions Important for Phytopathogenicity

Journal of Fungi, 2021
Phytopathogenic Ascomycota are responsible for substantial economic losses each year, destroying valuable crops. The present study aims to provide new insights into phytopathogenicity in Ascomycota from a comparative genomic perspective.
Daniel Peterson, Tang Li, Ana M. Calvo, Yanbin Yin   +3 more
doaj   +1 more source

Overlap between orthogroup-mapped genes and tissue lens and stress lens correlated genes with the GreenCut2 resource (Karpowicz).

, 2023
Overlap between orthogroup-mapped genes and tissue lens and stress lens correlated genes with the GreenCut2 resource (Karpowicz).
Robert VanBuren (3584303), Aman Y. Husbands (17583404), Sourabh Palande (17583362), Emily M. Roggenkamp (16816552), Thilani B. Jayakody (6315065), Jeremy Pardo (17583401), Joshua A. M. Kaste (17583365), Carly Claucherty (17583374), Jiaxin Yang (381186), Arjun Krishnan (5216162), Andriana Manousidaki (17583389), Hannah M. Parks (17583392), Addie M. Thompson (12247742), Sarah Percival (17583398), Nathan Kelly (17583386), Kenia Segura Abá (17583371), Rei Doko (17583380), Beronda L Montgomery (17583407), Ally M. Schumacher (17583395), Elizabeth Munch (17583410), Alejandra Rougon-Cardoso (198599), Daniel H. Chitwood (7869314), Hannah R. Jeffery (17583383), Miles D. Roberts (17583368), Jamell Dacon (17583377)   +24 more
core   +1 more source

An Integrative Bioinformatic Analysis for Keratinase Detection in Marine-Derived Streptomyces

Marine Drugs, 2021
Keratinases present promising biotechnological applications, due to their ability to degrade keratin. Streptomyces appears as one of the main sources of these enzymes, but complete genome sequences of keratinolytic bacteria are still limited.
Ricardo Valencia, Valentina González, Agustina Undabarrena, Leonardo Zamora-Leiva, Juan A. Ugalde, Beatriz Cámara   +5 more
doaj   +1 more source

Nucleotide diversity (π), ratio of non-synonymous to synonymous nucleotide diversity (π_N/π_S), orthogroup frequency for MAX effectors, other secreted proteins, and other genes.

, 2023
Nucleotide diversity (π), ratio of non-synonymous to synonymous nucleotide diversity (πN/πS), orthogroup frequency for MAX effectors, other secreted proteins, and other genes.
Jérôme Gracy (6464), Sébastien Ravel (13149944), Marie Le Naour—Vernet (16965108), André Padilla (486817), Sandrine Cros-Arteil (433329), Isabelle Meusnier (16965111), Pierre Gladieux (38299), Florian Veillet (9248685), Stella Cesari (417448), Florian Charriat (13149941), Thomas Kroj (274072)   +10 more
core   +1 more source

Distinctive gene expression in the reduced first thoracic legs of a nymphalid butterfly. [PDF]

Insect Mol Biol
Transcriptome analysis reveals that the small non‐walking front legs of a butterfly have distinct gene expression to the four walking legs. Reduced front legs express a gene with putative mechanosensory roles, a blue‐sensitive opsin and two homeobox genes.
Hoile AE, Mulhair PO, Holland PWH.
europepmc   +2 more sources