Results 41 to 50 of about 3,202 (209)

Orthogroup Transcriptome

, 2019
Transcriptome in fasta file format containing all contigs for the PAC and GOL population that were assigned an ...
Francis Pan (6328262), Morgan Kelly (3283722), Pan, Francis, Griffiths, Joanna, Kelly, Morgan, Joanna Griffiths (6328259)   +5 more
core   +1 more source

Non-synonymous and synonymous polymorphism in four lineages of P. oryzae.

, 2022
For each lineage, only orthogroups with sample size > = 4 were included in calculations. Lineage: lineage of origin of genomes used in calculations for each orthogroup. Orthogroup: orthogroup ID. N: sample size.
Joëlle Milazzo (3241791), Maud Thierry (13149938), Sandrine Cros-Arteil (433329), Pierre Gladieux (38299), Florian Charriat (13149941), Thomas Kroj (274072), Henri Adreit (3241800), Violaine Sella (13149950), Renaud Ioos (3727294), Sébastien Ravel (13149944), Elisabeth Fournier (209005), Sonia borron (13149947), Didier Tharreau (44528)   +12 more
core   +1 more source

Additional file 1 of Reconstruction of gene innovation associated with major evolutionary transitions in the kingdom Fungi

, 2022
Additional file 1: Figure S1. Protein number (A), orthogroup number (B), core orthogroup number (C) and copy number (D). Protein number and orthogroup number are shown for each phylum; core orthogroup number refers to orthogroups that are present in at ...
Baojun Wu (12879335), Weilong Hao (173203), Murray P. Cox (12879338)   +2 more
core   +1 more source

Systematic Discovery of Human Gene Function and Principles of Modular Organization through Phylogenetic Profiling

Cell Reports, 2015
Functional links between genes can be predicted using phylogenetic profiling, by correlating the appearance and loss of homologs in subsets of species. However, effective genome-wide phylogenetic profiling has been hindered by the large fraction of human
Gautam Dey, Ariel Jaimovich, Sean R. Collins, Akiko Seki, Tobias Meyer   +4 more
doaj   +1 more source

Assembly and annotation of the Gossypium barbadense L. ‘Pima-S6’ genome raise questions about the chromosome structure and gene content of Gossypium barbadense genomes

BMC Genomics, 2023
Background Gossypium barbadense L. Pima cotton is known for its resistance to Fusarium wilt and for producing fibers of superior quality highly prized in the textile market.
Ricardo A. Chávez Montes, Mauricio Ulloa, Tammy Biniashvili, Arik Zackay, Nir Kfir, Damar Lopez-Arredondo, Luis Herrera-Estrella   +6 more
doaj   +1 more source

Orthogroup RSEM merged matrix

, 2019
RSEM matrix file containing total expression counts for all contigs in each Orthogroup category; header explanantion: P or G referes to population origin (PAC or GOL), 1 2 or 3 refers to treatment replicate, H or L refers to high or low pH exposure, 1 or
Francis Pan (6328262), Morgan Kelly (3283722), Pan, Francis, Griffiths, Joanna, Kelly, Morgan, Joanna Griffiths (6328259)   +5 more
core   +1 more source

Parallel selection on ecologically relevant gene functions in the transcriptomes of highly diversifying salmonids

BMC Genomics, 2019
Background Salmonid fishes are characterised by a very high level of variation in trophic, ecological, physiological, and life history adaptations. Some salmonid taxa show exceptional potential for fast, within-lake diversification into morphologically ...
Kevin Schneider, Colin E. Adams, Kathryn R. Elmer   +2 more
doaj   +1 more source

PhyloFisher: A phylogenomic package for resolving eukaryotic relationships.

PLoS Biology, 2021
Phylogenomic analyses of hundreds of protein-coding genes aimed at resolving phylogenetic relationships is now a common practice. However, no software currently exists that includes tools for dataset construction and subsequent analysis with diverse ...
Alexander K Tice, David Žihala, Tomáš Pánek, Robert E Jones, Eric D Salomaki, Serafim Nenarokov, Fabien Burki, Marek Eliáš, Laura Eme, Andrew J Roger, Antonis Rokas, Xing-Xing Shen, Jürgen F H Strassert, Martin Kolísko, Matthew W Brown   +14 more
doaj   +1 more source

Characterization of the dynamic microbiome evolution across thrips species

Insect Science, EarlyView.
Comprehensive survey of the microbiome in thrips. The dominant bacterial genera found in thrips include intracellular ones, such as Wolbachia and Spiroplasma, and extracellular ones, including Serratia, Pantoea, and Acinetobacter. We isolated and sequenced high‐quality genomes of two dominant symbionts, Pantoea dispersa and Serratia marcescens.
Xiaodi Hu, Zhaohui Shi, Yangwei Gao, Hanze Zheng, Lin Lin, Jian‐Ping Chen, Yong Chen, Chuan‐Xi Zhang, Yiyuan Li   +8 more
wiley   +1 more source

Supplemental Dataset for, "Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench"

, 2020
The supplemental dataset for, "Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench"
Emms, David, Kelly, Steven
openaire   +1 more source