Results 41 to 50 of about 2,919 (208)

Whole-Genome Sequencing and Analysis of the White-Rot Fungus Ceriporia lacerata Reveals Its Phylogenetic Status and the Genetic Basis of Lignocellulose Degradation and Terpenoid Synthesis

Frontiers in Microbiology, 2022
Ceriporia lacerata is an endophytic white-rot fungus that has lignocellulolytic and terpenoid-biosynthetic abilities. However, little is known about the genomic architecture of this fungus, even at the genus level.
Zhitao Mao, Zhitao Mao, Zhitao Mao, Ping Yang, Ping Yang, Ping Yang, Huanhuan Liu, Yufeng Mao, Yufeng Mao, Yufeng Mao, Yu Lei, Yu Lei, Dongwei Hou, Dongwei Hou, Hongwu Ma, Hongwu Ma, Hongwu Ma, Xiaoping Liao, Xiaoping Liao, Xiaoping Liao, Wenxia Jiang, Wenxia Jiang, Wenxia Jiang   +22 more
doaj   +1 more source

Additional file 1 of Reconstruction of gene innovation associated with major evolutionary transitions in the kingdom Fungi

, 2022
Additional file 1: Figure S1. Protein number (A), orthogroup number (B), core orthogroup number (C) and copy number (D). Protein number and orthogroup number are shown for each phylum; core orthogroup number refers to orthogroups that are present in at ...
Baojun Wu (12879335), Weilong Hao (173203), Murray P. Cox (12879338)   +2 more
core   +1 more source

Integrative Analysis of Oleosin Genes Provides Insights into Lineage-Specific Family Evolution in Brassicales

Plants
Oleosins (OLEs) are a class of small but abundant structural proteins that play essential roles in the formation and stabilization of lipid droplets (LDs) in seeds of oil crops.
Zhi Zou, Li Zhang, Yongguo Zhao
doaj   +1 more source

Systematic Discovery of Human Gene Function and Principles of Modular Organization through Phylogenetic Profiling

Cell Reports, 2015
Functional links between genes can be predicted using phylogenetic profiling, by correlating the appearance and loss of homologs in subsets of species. However, effective genome-wide phylogenetic profiling has been hindered by the large fraction of human
Gautam Dey, Ariel Jaimovich, Sean R. Collins, Akiko Seki, Tobias Meyer   +4 more
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Comparative genomic analysis reveals differential genomic characteristics and featured genes between rapid- and slow-growing non-tuberculous mycobacteria

Frontiers in Microbiology, 2023
IntroductionNon-tuberculous mycobacteria (NTM) is a major category of environmental bacteria in nature that can be divided into rapidly growing mycobacteria (RGM) and slowly growing mycobacteria (SGM) based on their distinct growth rates.
Menglu Zhang, Peihan Wang, Peihan Wang, Cuidan Li, Ofir Segev, Jie Wang, Jie Wang, Xiaotong Wang, Liya Yue, Xiaoyuan Jiang, Yongjie Sheng, Asaf Levy, Chunlai Jiang, Fei Chen, Fei Chen, Fei Chen, Fei Chen   +16 more
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Orthogroup Transcriptome

, 2019
Transcriptome in fasta file format containing all contigs for the PAC and GOL population that were assigned an ...
Francis Pan (6328262), Morgan Kelly (3283722), Pan, Francis, Griffiths, Joanna, Kelly, Morgan, Joanna Griffiths (6328259)   +5 more
core   +1 more source

PlantTribes2: Tools for comparative gene family analysis in plant genomics

Frontiers in Plant Science, 2023
Plant genome-scale resources are being generated at an increasing rate as sequencing technologies continue to improve and raw data costs continue to fall; however, the cost of downstream analyses remains large.
Eric K. Wafula, Huiting Zhang, Huiting Zhang, Gregory Von Kuster, James H. Leebens-Mack, Loren A. Honaas, Claude W. dePamphilis, Claude W. dePamphilis   +7 more
doaj   +1 more source

Marine gregarine genomes reveal the breadth of apicomplexan diversity with a partially conserved glideosome machinery

BMC Genomics, 2022
Our current view of the evolutionary history, coding and adaptive capacities of Apicomplexa, protozoan parasites of a wide range of metazoan, is currently strongly biased toward species infecting humans, as data on early diverging apicomplexan lineages ...
Julie Boisard, Evelyne Duvernois-Berthet, Linda Duval, Joseph Schrével, Laure Guillou, Amandine Labat, Sophie Le Panse, Gérard Prensier, Loïc Ponger, Isabelle Florent   +9 more
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PhyloMCL: Accurate clustering of hierarchical orthogroups guided by phylogenetic relationship and inference of polyploidy events

Methods in Ecology and Evolution, 2020
AbstractIdentification of homology relationships is essential for inferring gene functions, detecting phylogeny of gene families, discovering evolutionary history of life, and usually, is the first step of many genetic and genomic studies. However, the presence of gene duplicates, variation on evolutionary rates of homologs, fusion and fission of genes,
Shengyu Zhou, Yamao Chen, Chunce Guo, Ji Qi   +3 more
openaire   +1 more source

Genome-scale comparative analysis for host resistance against sea lice between Atlantic salmon and rainbow trout

Scientific Reports, 2021
Sea lice (Caligus rogercresseyi) is an ectoparasite which causes major production losses in the salmon aquaculture industry worldwide. Atlantic salmon (Salmo salar) and rainbow trout (Oncorhynchus mykiss) are two of the most susceptible salmonid species ...
Pablo Cáceres, Agustín Barría, Kris A. Christensen, Liane N. Bassini, Katharina Correa, Baltasar Garcia, Jean P. Lhorente, José M. Yáñez   +7 more
doaj   +1 more source