Results 61 to 70 of about 2,919 (208)
, 2023 Filtering sequences increases confidence in the quality of the alignments and the information at each site but reduces orthogroup size. The most frequent orthogroup size after filtering is 15 of the original 18 sequences. (PDF)
Sean B. King (11725220) +1 more
core +1 more source
Distinctive gene expression in the reduced first thoracic legs of a nymphalid butterfly
Insect Molecular Biology, EarlyView.Transcriptome analysis reveals that the small non‐walking front legs of a butterfly have distinct gene expression to the four walking legs. Reduced front legs express a gene with putative mechanosensory roles, a blue‐sensitive opsin and two homeobox genes.
Asia E. Hoile +2 more
wiley +1 more source
OMGene: mutual improvement of gene models through optimisation of evolutionary conservation
BMC Genomics, 2018 Background The accurate determination of the genomic coordinates for a given gene – its gene model – is of vital importance to the utility of its annotation, and the accuracy of bioinformatic analyses derived from it.
Michael P. Dunne, Steven Kelly
doaj +1 more source
Insect Molecular Biology, EarlyView.A chromosome‐level genome of Elcysma westwoodi was assembled. The genome encodes 272 detoxification‐related genes. A single‐copy bCAS was retained for cyanide detoxification. CYP405A and CYP332A were recruited into cyanogenic defence evolution. UGT33A retained a conserved GT‐B fold and catalytic domains.
Minyoung Choi, Murtaza Khan, Juil Kim
wiley +1 more source
Regulatory profile of Orthogroup OG5_133097 in T. congolense.
, 2018 Members of orthogroup OG5_133097 encompass predicted proteins comprised of 12 amino acid repeats. Many members of this T. congolense enriched orthogroup are upregulated at peak parasitaemia, with TcIL3000_0_60190 being 4.5 fold up regulated at peak ...
Eleanor Silvester (4884406) +2 more
core +1 more source
Journal of Integrative Plant Biology, EarlyView.A high‐quality reference genome for the elite peanut cultivar Zhonghua No. 5 revealed differing evolutionary paths between the two peanut subgenomes. SubA has higher overall gene expression and more open chromatin, whereas SubB has stronger structural organization, higher DNA methylation, and greater adaptive diversity associated with peanut evolution ...
Taihua Yang +19 more
wiley +1 more source
, 2020 The supplemental dataset for, "Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench". This is the updated dataset for the article published in Genome Biology and Evolution.
Emms, David, Kelly, Steven
openaire +2 more sources
OrthoRefine: automated enhancement of prior ortholog identification via synteny
BMC BioinformaticsBackground Identifying orthologs continues to be an early and imperative step in genome analysis but remains a challenging problem. While synteny (conservation of gene order) has previously been used independently and in combination with other methods to
J. Ludwig, J. Mrázek
doaj +1 more source
Polyploid genome assembly of Cardamine chenopodiifolia
GigaByteCardamine chenopodiifolia is an amphicarpic plant in the Brassicaceae family. Plants develop two fruit types, one above and another below ground. This rare trait is associated with octoploidy in C. chenopodiifolia.
Aurélia Emonet +7 more
doaj +1 more source
New Phytologist, EarlyView.Three genotypes – a heat‐resistant maize (Zea mays), a heat‐susceptible maize, and a sorghum (Sorghum bicolor) variety – were grown to the V4 stage in growth chambers under optimal conditions or subjected to heat stress. Plants were grown in soil containing a complex microbial community, or in the same soil with a depleted microbiome.
Nate Korth +5 more
wiley +1 more source