Results 61 to 70 of about 3,202 (209)

Identification and functional analysis of class 3 lipases associated with triacylglycerol metabolism in Nannochloropsis oceanica (Eustigmatophyceae)

Journal of Phycology, EarlyView.
Abstract Microalgae accumulate triacylglycerols (TAGs) as storage lipids in response to nutrient limitation, yet the mechanisms governing TAG turnover remain incompletely understood. In the oleaginous microalga Nannochloropsis oceanica, functional studies of TAG degradation have focused on lipases containing patatin domains, whereas the roles of other ...
Masako Iwai, Koichi Hori, Tomokazu Kurita, Kumiko Okazaki, Shinichiro Maeda, Akihide Takami, Takashi Yamamoto, Atsushi Sakamoto, Hiroyuki Ohta, Mie Shimojima   +9 more
wiley   +1 more source

Crawling under the radar: Two novel Paulinella species expand knowledge about the ecology and evolution of a primary plastid‐containing amoeba lineage

Journal of Phycology, EarlyView.
Abstract The genus Paulinella represents a rare, independent case of primary endosymbiosis, providing a unique system to study the early stages of organelle evolution. Here, we expand current understanding of primary plastid endosymbiosis through the discovery and characterization of two novel photosynthetic amoebae, Paulinella marae sp. nov.
Julia Van Etten, Sungpil Han, John A. Burns, Duckhyun Lhee, Andrew C. Willoughby, Timothy G. Stephens, Erin Chille, Robin S. Sleith, Debashish Bhattacharya, Hwan Su Yoon   +9 more
wiley   +1 more source

Regulatory profile of Orthogroup OG5_133097 in T. congolense.

, 2018
Members of orthogroup OG5_133097 encompass predicted proteins comprised of 12 amino acid repeats. Many members of this T. congolense enriched orthogroup are upregulated at peak parasitaemia, with TcIL3000_0_60190 being 4.5 fold up regulated at peak ...
Eleanor Silvester (4884406), Keith R. Matthews (199001), Alasdair Ivens (33327)   +2 more
core   +1 more source

Histogram of the number of sequences in each multiple sequence alignment comprising the total set of 4197 orthogroups after filtering.

, 2023
Filtering sequences increases confidence in the quality of the alignments and the information at each site but reduces orthogroup size. The most frequent orthogroup size after filtering is 15 of the original 18 sequences. (PDF)
Sean B. King (11725220), Mona Singh (3194)   +1 more
core   +1 more source

Horizontal gene transfer and diploidy illuminate evolution and stress adaptation in oleaginous Scenedesmaceae (Chlorophyta)

Nature Communications
Oleaginous microalgae combine high lipid content with the ability to grow under diverse environmental conditions, the oleaginous species of family Scenedesmaceae (Sphaeropleales, Chlorophyta) having emerged as a promising source for biofuels ...
Linzhou Li, Hongli Wang, Xiayi Chen, Jingmin Kang, Yan Xu, Sunil Kumar Sahu, Maike Lorenz, Thomas Friedl, Christine Campbell, Cecilia Rad-Menéndez, Barbara Melkonian, Gane Ka-Shu Wong, Huan Liu, Ying Gu, Xun Xu, Tong Wei, Michael Melkonian, Sibo Wang   +17 more
doaj   +1 more source

Genome‐scale insights into metabolic streamlining and photosynthetic energy balance in the extremophile green alga Picocystis salinarum (Picocystophyceae, Chlorophyta)

Journal of Phycology, EarlyView.
Abstract Picocystis salinarum is an early‐diverging chlorophyte and the sole described member of the Picocystophyceae, frequently dominating hypersaline and alkaline lakes despite extreme physicochemical constraints. To elucidate the genomic foundations of its ecological success, we generated a fully annotated, chromosome‐scale nuclear genome assembly ...
Claude Lemieux, Christian Otis, Monique Turmel   +2 more
wiley   +1 more source

OrthoRefine: automated enhancement of prior ortholog identification via synteny

BMC Bioinformatics
Background Identifying orthologs continues to be an early and imperative step in genome analysis but remains a challenging problem. While synteny (conservation of gene order) has previously been used independently and in combination with other methods to
J. Ludwig, J. Mrázek
doaj   +1 more source

The host range paradox of Meloidogyne incognita: a physiological and transcriptomic analysis of nine susceptible interactions across six plant orders

New Phytologist, EarlyView.
Phylogenetic distance of host does not explain phenotypic differences of Meloidogyne incognita parasitism at 25 dpi. Summary The plant–parasitic nematode Meloidogyne incognita is the pathogen with the broadest host range among all known biotrophic interactions.
Victor Hugo Moura de Souza, Clement Pellegrin, Vincent C. T. Hanlon, Chongjing Xia, Olaf P. Kranse, Unnati Sonawala, Priya Desikan, Beatrice Senatori, Lucie Bolelli, Etienne G. J. Danchin, Lida Derevnina, Sebastian Eves‐van den Akker   +11 more
wiley   +1 more source

Whole-Genome Sequencing and Analysis of the White-Rot Fungus Ceriporia lacerata Reveals Its Phylogenetic Status and the Genetic Basis of Lignocellulose Degradation and Terpenoid Synthesis

Frontiers in Microbiology, 2022
Ceriporia lacerata is an endophytic white-rot fungus that has lignocellulolytic and terpenoid-biosynthetic abilities. However, little is known about the genomic architecture of this fungus, even at the genus level.
Zhitao Mao, Zhitao Mao, Zhitao Mao, Ping Yang, Ping Yang, Ping Yang, Huanhuan Liu, Yufeng Mao, Yufeng Mao, Yufeng Mao, Yu Lei, Yu Lei, Dongwei Hou, Dongwei Hou, Hongwu Ma, Hongwu Ma, Hongwu Ma, Xiaoping Liao, Xiaoping Liao, Xiaoping Liao, Wenxia Jiang, Wenxia Jiang, Wenxia Jiang   +22 more
doaj   +1 more source

Supplemental Dataset for, "Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench" - updated published version

, 2020
The supplemental dataset for, "Benchmarking Orthogroup Inference Accuracy: Revisiting Orthobench". This is the updated dataset for the article published in Genome Biology and Evolution.
Emms, David, Kelly, Steven
openaire   +2 more sources