Results 71 to 80 of about 3,202 (209)

Comparative genomics reveals lineage‐associated structural variation and diversification in a barley fungal pathogen

New Phytologist, EarlyView.
Genome‐wide copy‐number variation landscape highlights structural divergence across Puccinia hordei isolates and potentially links Cyp51 amplification to fungicide insensitivity. Summary Leaf rust, caused by Puccinia hordei, is a major barley disease worldwide.
Xiaohui Yu, Mumta Chhetri, Mafruha Hasan, Thomas H. Roberts, Peng Zhang, Robert F. Park, Yi Ding   +6 more
wiley   +1 more source

Combination of cryptobiotic states enhances survival of C. elegans dauer larvae.

, 2023
A) Desiccated dauer larvae manifest enhanced survival rate to heat stress (34°C). Error bars indicate standard deviation of two independent experiments with two technical replicates.
Sofia Traikov (656254), Teymuras V. Kurzchalia (492838), Anastasia Shatilovich (16698644), Philipp H. Schiffer (14561759), Tarja T. Hoffmeyer (16698650), Michael Hiller (11282), Eugene W. Myers (16698659), Elizaveta Rivkina (8015363), Sylke Winkler (2541403), Graham M. Hughes (16698656), Alexei V. Tchesunov (16698653), Martin Pippel (1906381), Vamshidhar R. Gade (16698647), Lewis Stevens (3777436)   +13 more
core   +1 more source

Reclassification of Botryococcus braunii chemical races into separate species based on a comparative genomics analysis.

PLoS ONE
The colonial green microalga Botryococcus braunii is well known for producing liquid hydrocarbons that can be utilized as biofuel feedstocks. B. braunii is taxonomically classified as a single species made up of three chemical races, A, B, and L, that ...
Devon J Boland, Ivette Cornejo-Corona, Daniel R Browne, Rebecca L Murphy, John Mullet, Shigeru Okada, Timothy P Devarenne   +6 more
doaj   +1 more source

High‐Contiguity Haplotype‐Resolved Genome Assembly of the Hexaploid Actinidia valvata Rootstock Sheds Light on Waterlogging Resistance Gene

Plant Biotechnology Journal, EarlyView.
ABSTRACT Polyploidisation, creating redundant or diverged copies of the genome, is a major driving force in plant evolution, diversification and environmental adaptation, including for the kiwifruit genus (Actinidia Lindl.). We present a high‐contiguity, haplotype‐resolved genome assembly of the hexaploid Actinidia valvata rootstock cultivar ...
Miaomiao Lin, Zhi Li, Cecilia H. Deng, Congcong Li, Zhengzhen Zhang, Yukuo Li, Qina Zhang, Peng Zhang, Leiming Sun, Mingyu Liu, Jinbao Fang, Xiujuan Qi   +11 more
wiley   +1 more source

Integrated genomic analysis of Stenotrophomonas maltophilia: resistome, virulence-associated genes, predicted mobile genetic elements, and core-genome phylogeny

Frontiers in Microbiology
BackgroundStenotrophomonas maltophilia is an emerging opportunistic pathogen characterized by intrinsic multidrug resistance and broad ecological distribution.
Rong Sun, Yandan Liu, Xiaoli Cao, Chang Liu, Shuo Gao, Bingbo Zhou, Qianjin Sun   +6 more
doaj   +1 more source

OMGene: mutual improvement of gene models through optimisation of evolutionary conservation

BMC Genomics, 2018
Background The accurate determination of the genomic coordinates for a given gene – its gene model – is of vital importance to the utility of its annotation, and the accuracy of bioinformatic analyses derived from it.
Michael P. Dunne, Steven Kelly
doaj   +1 more source

Combining Annotation Software to Identify Orthologous Genes (CASIO) Provides a New Dataset of Orthologous Genes for Swallowtail Butterflies

Molecular Ecology Resources, Volume 26, Issue 7, October 2026.
ABSTRACT With the massive increase in genomic resources, it is becoming increasingly popular to analyse thousands of loci across many species. However, many of the available genomes are not annotated, which hinders an efficient search for orthologous protein‐coding genes.
Gwenaelle Vigo, Benjamin Penaud, Eliette L. Reboud, Fabien L. Condamine, Benoit Nabholz   +4 more
wiley   +1 more source

Polyploid genome assembly of Cardamine chenopodiifolia

GigaByte
Cardamine chenopodiifolia is an amphicarpic plant in the Brassicaceae family. Plants develop two fruit types, one above and another below ground. This rare trait is associated with octoploidy in C. chenopodiifolia.
Aurélia Emonet , Mohamed Awad , Nikita Tikhomirov , Maria Vasilarou , Miguel Pérez-Antón , Xiangchao Gan , Polina Yu. Novikova , Angela Hay   +7 more
doaj   +1 more source

Marine gregarine genomes reveal the breadth of apicomplexan diversity with a partially conserved glideosome machinery

BMC Genomics, 2022
Our current view of the evolutionary history, coding and adaptive capacities of Apicomplexa, protozoan parasites of a wide range of metazoan, is currently strongly biased toward species infecting humans, as data on early diverging apicomplexan lineages ...
Julie Boisard, Evelyne Duvernois-Berthet, Linda Duval, Joseph Schrével, Laure Guillou, Amandine Labat, Sophie Le Panse, Gérard Prensier, Loïc Ponger, Isabelle Florent   +9 more
doaj   +1 more source

Genomes, annotations, and counts tables

, 2022
# README* Annotations.tar.gz - Contains genome statistics, mappings between ORF Contig MAG SLC, ORF Orthogroup SLC, and annotations.* Classifications.tar.gz - Contains taxonomic classifications for genomes (both bacterial and viral).* Counts ...
Josh Espinoza (9740534)
core   +1 more source