Results 61 to 70 of about 2,610 (179)

OMGene: mutual improvement of gene models through optimisation of evolutionary conservation

BMC Genomics, 2018
Background The accurate determination of the genomic coordinates for a given gene – its gene model – is of vital importance to the utility of its annotation, and the accuracy of bioinformatic analyses derived from it.
Michael P. Dunne, Steven Kelly
doaj   +1 more source

Characterization of the dynamic microbiome evolution across thrips species

Insect Science, EarlyView.
Comprehensive survey of the microbiome in thrips. The dominant bacterial genera found in thrips include intracellular ones, such as Wolbachia and Spiroplasma, and extracellular ones, including Serratia, Pantoea, and Acinetobacter. We isolated and sequenced high‐quality genomes of two dominant symbionts, Pantoea dispersa and Serratia marcescens.
Xiaodi Hu, Zhaohui Shi, Yangwei Gao, Hanze Zheng, Lin Lin, Jian‐Ping Chen, Yong Chen, Chuan‐Xi Zhang, Yiyuan Li   +8 more
wiley   +1 more source

Multi‐omics analyses shed lights on the evolution and fruit development of Chinese raspberries (Rubus spp.)

Journal of Integrative Plant Biology, EarlyView.
High‐quality genomes of four wild raspberry species, analysis of their genetic relationships, identification of centromeres as markers for tracing their hybrid origins, exploration of fruit quality regulation, and discovery of a gene blocking anthocyanin transport and thus causing yellow fruits provides valuable resources for raspberry breeding ...
Ticao Zhang, Dengli Luo, Guodong Li, Huanchong Wang, Qiang Cao, Rengang Zhang, Yuran Li, Yingan Zhu, Chunhua Ma, Aaron Liston, Hang Sun, Qin Qiao   +11 more
wiley   +1 more source

Identification of bromelain subfamily proteases encoded in the pineapple genome

Scientific Reports, 2023
Papain (aka C1A) family proteases, including bromelain enzymes, are widespread across the plant kingdom and play critical regulatory functions in protein turnover during development.
Ashley G. Yow, Hamed Bostan, Roberto Young, Giuseppe Valacchi, Nicholas Gillitt, Penelope Perkins-Veazie, Qiu-Yun (Jenny) Xiang, Massimo Iorizzo   +7 more
doaj   +1 more source

The annotated blueprint: integrated functional genomic resources for a model tetraploid wheat Triticum turgidum cv Kronos

New Phytologist, EarlyView.
Summary Triticum turgidum cv Kronos is a tetraploid wheat cultivar that underpins one of the most widely used community platforms for functional genomics. Over the past decade, researchers have generated c. 3000 exome‐capture (EC) and promoter‐capture (PC) datasets linked to mutagenized seed stocks, along with extensive transcriptomic and phenotypic ...
Kyungyong Seong, Rakesh Kumar, Daniil M. Prigozhin, China Lunde, Thales Henrique Cherubino Ribeiro, Sébastien Bélanger, Jo‐Wei Allison Hsieh, McCree Tang, Blake C. Meyers, Ksenia V. Krasileva   +9 more
wiley   +1 more source

Genome and Single‐Cell Transcriptome Reveal the Evolution of Holoparasitic Plants: A Case Study of Cistanche deserticola

Plant Biotechnology Journal, EarlyView.
ABSTRACT The Orobanchaceae family, the largest group of parasitic plants, spans a complete spectrum from autotrophic to holoparasitic species. As a typical endangered holoparasitic species within this family, Cistanche deserticola is a parasitic plant that is widely harvested for traditional medicine in desertic regions, and of growing importance as a ...
Xinke Zhang, Yujing Miao, Yuanyuan Xing, Guoshuai Zhang, Meiqiao Zhang, Chris J. Thorogood, Shilin Chen, Linfang Huang   +7 more
wiley   +1 more source

Polyploid genome assembly of Cardamine chenopodiifolia

GigaByte
Cardamine chenopodiifolia is an amphicarpic plant in the Brassicaceae family. Plants develop two fruit types, one above and another below ground. This rare trait is associated with octoploidy in C. chenopodiifolia.
Aurélia Emonet , Mohamed Awad , Nikita Tikhomirov , Maria Vasilarou , Miguel Pérez-Antón , Xiangchao Gan , Polina Yu. Novikova , Angela Hay   +7 more
doaj   +1 more source

Radicals of semigroup rings of orthogroups

Semigroup Forum, 1990
Let S be an orthogroup, that is a completely regular semigroup the idempotent set of which is a subsemigroup. By a result of \textit{M. Petrich} [Proc. Am. Math. Soc. 99, 617-622 (1987; Zbl 0622.20050)], S is a semilattice Y of semigroups \(S_{\alpha}=I_{\alpha}\times G_{\alpha}\times \Lambda_{\alpha}\), \(\alpha\in Y\), where \(I_{\alpha ...
openaire   +2 more sources

Haplotype‐Resolved Genome Assembly and Population Genomics Reveal Evolutionary History and Agronomic Traits of Mulberry

Plant Biotechnology Journal, EarlyView.
ABSTRACT Mulberry is a representative economic tree species valued for both poverty alleviation and medicinal use. To advance the understanding of mulberry genomics and demography, we assembled high‐quality haploid genomes of two widely cultivated mulberry varieties NS14 and QS1, and analysed 376 accessions from 12 countries, including 39 ancient trees
Zhifeng Wang, Peigang Liu, Chengzhi Jiao, Yazhou Zhang, Zilong Xu, Tianbao Lin, Yan Zhu, Xin Jing, Yuan Huang, Nan Chao, Mengjie Zhao, Yan Liu, Huizi Liu, Bo Sun, Fen Zhang, Quanzi Li, Zhiqiang Lv, Xuepeng Sun, Ying‐Chung Jimmy Lin, Jia Wei   +19 more
wiley   +1 more source

Reclassification of Botryococcus braunii chemical races into separate species based on a comparative genomics analysis.

PLoS ONE
The colonial green microalga Botryococcus braunii is well known for producing liquid hydrocarbons that can be utilized as biofuel feedstocks. B. braunii is taxonomically classified as a single species made up of three chemical races, A, B, and L, that ...
Devon J Boland, Ivette Cornejo-Corona, Daniel R Browne, Rebecca L Murphy, John Mullet, Shigeru Okada, Timothy P Devarenne   +6 more
doaj   +1 more source