Optimising the analysis of transcript data using high density oligonucleotide arrays and genomic DNA-based probe selection [PDF]
Background: Affymetrix GeneChip arrays are widely used for transcriptomic studies in a diverse range of species. Each gene is represented on a GeneChip array by a probe-set, consisting of up to 16 probe-pairs. Signal intensities across probe-pairs within
Broadley, Martin R. +4 more
core +4 more sources
Nitric oxide alleviates cadmium- but not arsenic-induced damages in rice roots [PDF]
Nitric oxide (NO) has signalling roles in plant stress responses. Cadmium (Cd) and arsenic (As) soil pollutants alter plant development, mainly the root-system, by increasing NO-content, triggering reactive oxygen species (ROS), and forming peroxynitrite
Altamura, M. M. +6 more
core +1 more source
This study identifies a novel thermoregulatory mechanism in rice: TOGR3 partners with 26S proteasome subunits, including TT1, to drive thermoresponsive ubiquitin–proteasome activity, maintaining sugar homeostasis in stomatal regulation to balance growth and stress resistance.
Biyao Zhang +9 more
wiley +1 more source
A survey of sequences of KT-HAK-KUP transporters in green algae and basal land plants [PDF]
In this data article, information is provided on sequences of KT-HAK-KUP transporters from green algae and basal land plants. A data set is offered containing sequences corresponding to the chlorophyte algae Chlamydomonas eustigma, Gonium pectorale and ...
Moriconi, Jorge Ignacio +2 more
core +1 more source
Genome‐Wide Association Analyses Reveal the Genetic Basis of EMS Mutagenesis Efficiency in Rice
Based on large‐scale screening of 420 rice accessions, GWAS identified the Rc locus as a key regulator of EMS mutagenesis efficiency. Functional Rc alleles enhance both seed survival and genome‐wide mutation frequency by boosting antioxidant enzyme activities (CAT, SOD, POD) and reducing oxidative damage.
Peizhou Xu +9 more
wiley +1 more source
Discovery that deadenylation, rather than transcription, acts as the rate‐limiting step for developmental timing in a plant pathogen. Evidence that P‐body integrity and mRNA decay are mechanistically coupled to rapid cellular differentiation under environmental stress. Identification of Pan2‐Pan3 as a pathogen‐specific “meta‐virulence factor” absent in
Ziwei Lv +6 more
wiley +1 more source
THE SALT-TOLERANT RICE SELECTION SUITABLE FOR SALINE WASTE WATERIRRIGATION IN ERGENE BASIN
The aim of this study is to use morphological and physiological parameters to select both salt tolerant and high yielding rice cultivars convenient for growth in the salinity conditions of the Ergene Basin.
Mehmet Aybeke, Hande Demi̇ral
doaj +2 more sources
PENGARUH LAMA PEMBERIAN AIR DAN MACAM PUPUK ORGANIK TERHADAP PERTUMBUHAN DAN HASIL TEMBAKAU (Nicotiana tabacum) DI LAHAN SAWAH MADURA DENGAN SISTEM IRIGASI TETES [PDF]
This research is aimed to learn/study the influence of giving of water in a long time with drip irrigation system and use of organic manure to growth and result of tobacco in rice field of Madura.\ud The Research is conducted at Kwanyar Orchard, Pademawu
Leksana Oryza, Dwi
core
Time‐Efficient and Informatic‐Skill‐Light Gap‐Filling for Telomere‐to‐Telomere Genome Assembly
The paper introduces a novel auxiliary software toolbox GapSuite, consisting of two tools Gap‐Aid and Gap‐Graph, which guides users to fill gaps in chromosome‐level genome assembly using sequence‐extension‐based and assembly‐graph‐based strategies. The two tools enable users with limited informatics expertise to efficiently complete gap‐filling on ...
Dong Xu +8 more
wiley +1 more source
Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription [PDF]
BACKGROUND: Serial Analysis of Gene Expression (SAGE) is a powerful tool for genome-wide transcription studies. Unlike microarrays, it has the ability to detect novel forms of RNA such as alternatively spliced and antisense transcripts, without the need ...
Barker, Gary L A +8 more
core +2 more sources

