Results 111 to 120 of about 169,584 (184)

Genomic adaptability and virulence of Bacillus anthracis: a machine learning-based pan-genome and comparative analysis. [PDF]

BMC Genomics
Sekar YS, Chellapandi P, Suresh KP, Saranya SV, Papanna M, Gulati BR, Amachawadi RG, Khatoon M, Hemadri D, Archana CA, Rani S, Patil A, Palavesam A, Sagar N, Anand J, Patil SS.   +15 more
europepmc   +1 more source

Gramene 2025: expanded comparative genomics and pathway resources, integrated search, and pan-genome portals for crop research. [PDF]

Nucleic Acids Res
Olson A, Kumari S, Wei X, Chougule K, Lu Z, Tello-Ruiz MK, Kumar V, Van Buren P, Olson A, Kim C, Braynen J, Zhang L, Dyer S, Alvarez-Jarreta J, Saraf S, Contreras-Moreira B, Naamati G, Ernst C, Papatheodorou I, George N, Jaiswal P, Naithani S, Gupta P, Elser J, D'Eustachio P, Assmann SM, Ferrero-Serrano Á, Pasha A, Provart N, Gladman N, Ware D.   +30 more
europepmc   +1 more source

De novo annotation reveals transcriptomic complexity across the hexaploid wheat pan-genome. [PDF]

Nat Commun
White B, Lux T, Rusholme-Pilcher R, Juhász A, Kaithakottil G, Duncan S, Simmonds J, Rees H, Wright J, Colmer J, Ward S, Joynson R, Coombes B, Irish N, Henderson S, Barker T, Chapman H, Catchpole L, Gharbi K, Bose U, Okada M, Handa H, Nasuda S, Shimizu KK, Gundlach H, Lang D, Naamati G, Legg EJ, Bharti AK, Colgrave ML, Haerty W, Uauy C, Swarbreck D, Borrill P, Poland JA, Krattinger SG, Stein N, Mayer KFX, Pozniak C, 10+ Wheat Genome Project, Spannagl M, Hall A.   +41 more
europepmc   +1 more source

Comparative Genomic Analysis of <i>Brevibacillus brevis</i>: Insights into Pan-Genome Diversity and Biocontrol Potential. [PDF]

Microorganisms
Yang W, Bao Q, Wang Y, Xiao L, Zeng Z, Zhou L, Yang H.   +6 more
europepmc   +1 more source

Pan-genome Search and Storage

, 2018
High Throughput Sequencing (HTS) technologies are constantly improving and making genome sequencing more affordable. However, HTS sequencers can only produce short overlapping genome fragments that are erroneous and cover the sequenced genomes unevenly. These genome fragments are assembled based on their overlaps to produce larger contiguous sequences.
openaire   +1 more source

The phased pan-genome of tetraploid European potato. [PDF]

Nature
Sun H, Tusso S, Dent CI, Goel M, Wijfjes RY, Baus LC, Dong X, Campoy JA, Kurdadze A, Walkemeier B, Sänger C, Huettel B, Hutten RCB, van Eck HJ, Dehmer KJ, Schneeberger K.   +15 more
europepmc   +1 more source

Dynamic Pan-genome graphs

The rapid advancements in sequencing technologies have revolutionized genomics, leading to massive genomic databases and thousands of assembled genomes. This exponential growth of data exposed the limitations of traditional reference-based models and motivated the development of pan-genomic representations that reflect species diversity.
openaire   +1 more source

Gene-level analysis of core carbohydrate metabolism across the Enterobacteriaceae pan-genome. [PDF]

Commun Biol
Näpflin N, Schubert C, Malfertheiner L, Hardt WD, von Mering C.   +4 more
europepmc   +1 more source

Pan-Genome-Based Characterization of the PYL Transcription Factor Family in <i>Populus</i>. [PDF]

Plants (Basel)
Han X, Qiu C, Gai Z, Zhai J, Song J, Sun J, Li Z.   +6 more
europepmc   +1 more source

Pan-genome analysis reveals the evolution and diversity of Malus. [PDF]

Nat Genet
Li W, Chu C, Zhang T, Sun H, Wang S, Liu Z, Wang Z, Li H, Li Y, Zhang X, Geng Z, Wang Y, Li Y, Zhang H, Fan W, Wang Y, Xu X, Cheng L, Zhang D, Xiong Y, Li H, Zhou B, Guan Q, Deng CH, Han Y, Ma H, Han Z.   +26 more
europepmc   +1 more source