Results 131 to 140 of about 11,936 (226)

Comparative genomics of obligate predatory bacteria belonging to phylum Bdellovibrionota highlights distribution and predicted functions of lineage-specific protein families

mSphere
Comparative genomics of predatory bacteria is important to understand their ecology and evolution and explore their potential to treat drug-resistant infections.
Sidney C. Davis, Joseph Cerra, Laura E. Williams   +2 more
doaj   +1 more source

Virus Pangenome Analysis Programmatic Guides [PDF]

Python v3.9 programmatic guides for conducting a pangenome analysis of phages in the PhagesDB ...
Daphne Fauber, Kari L Clase
core   +1 more source

A draft UAE-based Arab pangenome reference

Nature Communications
Pangenomes provide a robust and comprehensive portrayal of genetic diversity in humans, but Arab populations remain underrepresented. We present a preliminary UAE-based Arab Pangenome Reference (UPR) utilizing 53 individuals of diverse Arab ethnicities ...
Nasna Nassir, Mohamed A. Almarri, Muhammad Kumail, Nesrin Mohamed, Bipin Balan, Shehzad Hanif, Maryam AlObathani, Bassam Jamalalail, Hanan Elsokary, Dasuki Kondaramage, Suhana Shiyas, Noor Kosaji, Dharana Satsangi, Madiha Hamdi Saif Abdelmotagali, Ahmad Abou Tayoun, Olfat Zuhair Salem Ahmed, Douaa Fathi Youssef, Hanan Al Suwaidi, Ammar Albanna, Stefan S Du Plessis, Hamda Hassan Khansaheb, Alawi Alsheikh-Ali, Mohammed Uddin   +22 more
doaj   +1 more source

Phenotypic Characterization and Genomic Mining of Uric Acid Catabolism Genes in Lactiplantibacillus plantarum YC

Foods
This study presents the phenotypic characterization and genomic mining of uric acid catabolism genes in Lactiplantibacillus plantarum YC, a novel food-grade lactic acid bacterium isolated from traditional fermented vegetables with potent uric acid ...
Yuqing Zhao, Sen Yang, Miao He, Peihan Chai, Zhenou Sun, Qiaomei Zhu, Zhenjing Li, Qingbin Guo, Huanhuan Liu   +8 more
doaj   +1 more source

Advancing the Indian cattle pangenome: characterizing non-reference sequences in Bos indicus

Journal of Animal Science and Biotechnology
Background India harbors the world’s largest cattle population, encompassing over 50 distinct Bos indicus breeds. This rich genetic diversity underscores the inadequacy of a single reference genome to fully capture the genomic landscape of Indian cattle.
Sarwar Azam, Abhisek Sahu, Naveen Kumar Pandey, Mahesh Neupane, Curtis P Van Tassell, Benjamin D Rosen, Ravi Kumar Gandham, Subha Narayan Rath, Subeer S Majumdar   +8 more
doaj   +1 more source

Biogeographical and phylogenetic constraints on horizontal gene transfer and genome evolution in Streptomyces

Microbiology Spectrum
The role of horizontal gene transfer (HGT) in shaping bacterial genomes is well recognized, but constraints on gene exchange and the degree to which these constraints shape genome evolution remain poorly described.
Janani Hariharan, Cheryl P. Andam, Daniel H. Buckley   +2 more
doaj   +1 more source

Graphical pangenomics

, 2018
Wellcome Trust PhD ...
openaire   +4 more sources

Pangenomics for Agricultural Breeding: Construction Strategies, Evidence Integration, and Translational Constraints. [PDF]

Biology (Basel)
Shi J, Lu Y, Sheng Z, Liu H, Li K, Chong Y, Gao Z, Deng W, Wu D.   +8 more
europepmc   +1 more source

Expanding vaginal microbiome pangenomes via a custom MIDAS database reveals <i>Lactobacillus crispatus</i> accessory genes associated with cervical dysplasia. [PDF]

mSystems
Dubin CA, Zhao C, Pollard KS, Oskotsky T, Golob JL, Sirota M.   +5 more
europepmc   +1 more source

Interpretable learning algorithms enable pathogenic potential assessment and virulence-associated gene discovery of <i>Vibrio parahaemolyticus</i>. [PDF]

Front Microbiol
Liu Z, Li Z, Zhang J, Brown CT, Wang L.
europepmc   +1 more source