Results 111 to 120 of about 11,936 (226)

Structure of the Enterobacter pan-genome is revealed using machine learning

Microbiology Spectrum
The growing availability of publicly accessible Enterobacter genomes offers an opportunity to reveal the structure of its pangenome, uncovering the catalog of genes across the genus and their distribution across the different species and subspecies of ...
Joshua T. Burrows, Gaoyuan Li, Jonathan M. Monk, Siddharth M. Chauhan, Bernhard O. Palsson   +4 more
doaj   +1 more source

Macroecology of Microbial Performance Across Earth's Biomes

Global Ecology and Biogeography, Volume 35, Issue 7, July 2026.
ABSTRACT Aim A central goal of global ecology is to determine whether widespread spatial distribution reflects broad ecological performance. For microorganisms, this remains unresolved because occurrence and performance are rarely evaluated together across biomes.
Angel Rain‐Franco, Adrian‐Stefan Andrei, Jakob Pernthaler   +2 more
wiley   +1 more source

Pangenome-scale mathematical modelling of ANAMMOX bacteria metabolism [PDF]

Removal of fixed nitrogen compounds such as ammonium and nitrite from wastewater is of critical importance for balancing the nitrogen cycle and protecting aquatic environments from eutrophication.
Ahsan Islam (4116055), Roman G. Bielski (22826809)   +1 more
core  

Speciation of European bullheads (Cottus spp.): The next problem for taxonomy of northern freshwater fishes

Journal of Fish Biology, Volume 109, Issue 1, Page 15-26, July 2026.
Abstract High morphological and ecological diversity displayed by European bullheads led Freyhof et al. (2005) to describe 15 nominal species. However, the basis for declaring these nominal species is contentious due to a lack of rigorous statistical analysis of morphological variations among populations, limitations in the inferences made from ...
David S. Murray, Vladimír Kováč, David Wright, Gordon H. Copp   +3 more
wiley   +1 more source

PanGraphRNA: An efficient and flexible bioinformatics platform for graph pangenome‐based RNA‐seq data analysis

Journal of Integrative Plant Biology, Volume 68, Issue 7, Page 2001-2017, July 2026.
PanGraphRNA is an easy‐to‐use platform that improves RNA‐seq analysis by using graph pangenomes instead of a single reference genome. It increases read alignment accuracy, detects important genes missed by traditional methods, and works across major crops, helping researchers obtain more reliable transcriptome results for diverse plant research and ...
Yifan Bu, Zhixu Qiu, Wen Sun, Yishui Han, Yifan Liu, Jing Yang, Minggui Song, Zenglin Li, Songyu Liu, Yuzhou Zhang, Chuang Ma   +10 more
wiley   +1 more source

GPSC pangenome analysis [PDF]

The data represents core genomes of major GPSC types and Indian Pneumococcal Pangenome (file name: coreGenome.*). All the raw data is presented in the supplementary file.
Sreeram Peela (14308760), Sujatha Sistla (8665158)   +1 more
core   +1 more source

Pangenome analysis reveals the genetic mechanism underlying high‐altitude adaptation in Qinghai–Xizang (Tibet) Plateau Rhododendron

Journal of Integrative Plant Biology, Volume 68, Issue 7, Page 2166-2188, July 2026.
Pan‐genome analysis reveals that high‐altitude Rhododendron species resist alpine cold stress by rapidly sensing and engaging the chilling response pathway and genes that directly and indirectly protect the plant from UV radiation. Heritable genomic features such as long terminal repeats contribute to the adaptive diversification of Rhododendron ...
Haoyang Zhou, Zhongping Xu, Fanhuang Zeng, Haiyu Sang, Zhenhua Liu, Miao Sun, Qiang Fu, Kaige Zhao, Daming Tan, Manzhu Bao, Shuangxia Jin, Xiuqun Liu   +11 more
wiley   +1 more source

Integrating Complex Pangenome Graphs

2024 IEEE 40th International Conference on Data Engineering Workshops (ICDEW)
Graph databases are increasingly used to handle complex data pipelines, in which interconnected data is exploited for visualization and analytics. We propose a novel method, PanGraph-DB, for performing complex inter-pangenomic analysis within a graph database. As a case study, we focus on the antibiotic resistance in sequenced genomes.
Arnoux, Jérôme, Bonifati, Angela, Calteau, A., Dumbrava, Stefania, Gautreau, Guillaume   +4 more
openaire   +2 more sources

Revisiting pangenome openness with k-mers

Peer Community Journal
Pangenomics is the study of related genomes collectively, usually from the same species or closely related taxa. Originally, pangenomes were defined for bacterial species. After the concept was extended to eukaryotic genomes, two definitions of pangenome
Parmigiani, Luca, Wittler, Roland, Stoye, Jens   +2 more
doaj   +1 more source

Structure‐informed engineering of plant–microbe interactions

The Plant Journal, Volume 127, Issue 1, July 2026.
SUMMARY This review critically evaluates how structural biology has enabled interface‐informed engineering of plant–microbe interactions, with a clear emphasis on the relative maturity of plant–pathogen research compared with symbiosis engineering. In plant immunity, atomic resolution structures of apoplastic receptors, host targets, and intracellular ...
Gloria Meng‐Hsuan Lin, Tim Lange, Alexander Förderer   +2 more
wiley   +1 more source