Pangenome Construction Pipeline for Eukaryotes
, 2020 In the field of plant genomics, there is an increasing trend towards the study of a species’ full complement of genes, termed the species’ pangenome, which can be used to capture the entire gene repertoire of a clade. This has created an expanding demand
Todd, Clarence
core
An Icelandic pangenome reference
Reference bias is an issue that affects most genomic studies analysing short reads mapped to a reference genome 1,2 . It can be mitigated by mapping to multiple haplotypes represented in a pangenome
Daniel F. Gudbjartsson +16 more
core +1 more source
How the social lives of bacteria affect their pangenome. [PDF]
Essays BiochemWhelan FJ.
europepmc +1 more source
Pangenome analysis reveals both niche-specific "specialists" and microbial "side hustlers" in colorectal cancer microbiomes. [PDF]
Gut MicrobesLee J, Minot S, Dey N.
europepmc +1 more source
Structural polymorphism and population-variable coding capacity of HERV-K(HML-2) in human pangenomes [PDF]
Daniel Worstell +5 more
+4 more sources
The data represents core genomes of major GPSC types and Indian Pneumococcal Pangenome (file name: coreGenome.*). All the raw data is presented in the supplementary file.
Sreeram Peela (14308760) +1 more
core +1 more source
Pangenome of <i>Streptomyces sampsonii</i> and Relatives Highlights Horizontal Gene Transfer and Secondary Metabolism in Environmental Adaptation and Ecological Significance. [PDF]
Ecol EvolZhang B, Ji S.
europepmc +1 more source
European ash pangenome reveals widespread structural variation and genetic basis of low ash dieback susceptibility. [PDF]
Nat CommunWood DP +10 more
europepmc +1 more source
Improving Long-Read Somatic Structural Variant Calling with Pangenome and De Novo Personal Genome Assembly. [PDF]
Cancer Res CommunQin Q, Heinz JM, Li H.
europepmc +1 more source