Results 91 to 100 of about 11,936 (226)

Genetic and Ecological Management of Pacific Salmon Fisheries for the 21st Century

Fisheries Management and Ecology, Volume 33, Issue 4, Page 633-645, August 2026.
ABSTRACT Based on ecological adaptation theory, tremendous effort is being spent on measures that are eliminating salmon hatcheries and fishing opportunities with the intention of protecting wild runs deemed to be of particular genetic importance to the survival of the species.
Randall E. Brummett, Ian G. Cowx, Devin M. Bartley   +2 more
wiley   +1 more source

Accessory regions and horizontal gene transfer shape the evolution of clonal Colletotrichum nymphaeae infecting strawberry

New Phytologist, Volume 251, Issue 4, Page 2186-2205, August 2026.
Genetic diversity of strawberry‐infecting Colletotrichum isolates. Summary Rapid adaptation in fungal plant pathogens is often attributed to sexual recombination, yet many important pathogens are largely clonal. We investigated how genetic and phenotypic diversity arises in the predominantly asexual fungus Colletotrichum nymphaeae, the main cause of ...
Joris A. Alkemade, Alan G. Buddie, Anthony Kermode, Timothy G. Barraclough   +3 more
wiley   +1 more source

Pangenome Construction Pipeline for Eukaryotes [PDF]

, 2020
In the field of plant genomics, there is an increasing trend towards the study of a species’ full complement of genes, termed the species’ pangenome, which can be used to capture the entire gene repertoire of a clade. This has created an expanding demand
Todd, Clarence
core  

A gentle introduction to pangenomics

Briefings in Bioinformatics
Abstract Pangenomes have emerged in response to limitations associated with traditional linear reference genomes. In contrast to a traditional reference that is (usually) assembled from a single individual, pangenomes aim to represent all of the genomic variation found in a group of organisms.
Chelsea A Matthews, Nathan S. Watson-Haigh, Rachel A. Burton, Anna E. Sheppard   +3 more
openaire   +2 more sources

PangeBlocks: customized construction of pangenome graphs via maximal blocks

BMC Bioinformatics
Background The construction of a pangenome graph is a fundamental task in pangenomics. A natural theoretical question is how to formalize the computational problem of building an optimal pangenome graph, making explicit the underlying optimization ...
Jorge Avila Cartes, Paola Bonizzoni, Simone Ciccolella, Gianluca Della Vedova, Luca Denti   +4 more
doaj   +1 more source

Beyond single references: pangenome graphs and the future of genomic medicine

Frontiers in Genetics
Genomic medicine relies on single reference genomes that miss crucial genetic diversity, creating diagnostic gaps that disproportionately affect underrepresented populations.
Denis M. Nyaga, Roan E. Zaied, Olin K. Silander, Michael A. Black, Justin M. O’Sullivan   +4 more
doaj   +1 more source

Transcriptional Regulation of the Novel Theacrine Synthase Gene CsTcS2 by the CsTINY–CsWRKY33 Module Underpins Theacrine Biosynthesis in Camellia sinensis

Plant Biotechnology Journal, Volume 24, Issue 8, Page 4823-4843, August 2026.
ABSTRACT Theacrine (1,3,7,9‐tetramethyluric acid) is a purine alkaloid detected in multiple wild and specialised tea germplasms (Camellia sinensis) from South China, including Kucha. However, the molecular mechanisms governing its biosynthesis remain poorly understood. Here, we identify CsTcS2 as a novel theacrine synthase in tea plant.
Ting Wu, Lihua Zhu, Chenyu Shao, Siyi Xie, Na Li, Xinyu Li, Fang Wang, Lvwen Peng, Huiying Jin, Fanghuizi Shang, Jianan Huang, Zhonghua Liu, Na Tian, Shuoqian Liu   +13 more
wiley   +1 more source

Burkholderia pangenome overview of counts. [PDF]

, 2020
Burkholderia pangenome overview of counts.
Michael D. Lee (562262), R. Craig Everroad (7827193), Chris L. Dupont (8468604), Aubrie O’Rourke (8468598), William C. Nierman (8468601)   +4 more
core   +1 more source

The Trichinella Super‐Pangenome Reveals the Evolution of Encapsulation and Predicted Host–Parasite Protein Interactions

Advanced Science, Volume 13, Issue 37, 3 July 2026.
ABSTRACT The muscle capsule of Trichinella is a critical structure that impedes immune attacks and drug penetration, yet the molecular mechanisms underlying its formation remain poorly understood. Using a high‐quality super‐pangenome comprising 12 Trichinella species, we compared extensive genomic variations between encapsulating and non‐encapsulating ...
Qingbo Lv, Yi Liu, Ning Xu, Xiao Zhang, Yaming Yang, Chengyao Li, Hanhai Mao, Mingyuan Liu, Xiaolei Liu   +8 more
wiley   +1 more source

Co-linear chaining on pangenome graphs

Algorithms for Molecular Biology
Pangenome reference graphs are useful in genomics because they compactly represent the genetic diversity within a species, a capability that linear references lack.
Jyotshna Rajput, Ghanshyam Chandra, Chirag Jain   +2 more
doaj   +1 more source