Results 91 to 100 of about 15,819 (203)

Evaluating data requirements for high-quality haplotype-resolved genomes for creating robust pangenome references

Genome Biology
Background Long-read technologies from Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT) have transformed genomics research by providing diverse data types like HiFi, Duplex, and ultra-long ONT.
Prasad Sarashetti, Josipa Lipovac, Filip Tomas, Mile Šikić, Jianjun Liu   +4 more
doaj   +1 more source

Genomic and Metabolomic Insights Into the Probiotic Potential of Weissella viridescens

Biology
Weissella viridescens has been proposed as a probiotic candidate, but strain-level multi-omics evidence remains limited. The complete genome of the human-derived W.
Shuwei Zhang, Ruiting Lan, Ruiqing Zhao, Ruoshi Wang, Liyun Liu, Jianguo Xu   +5 more
doaj   +1 more source

Comparative genomics profiling of Citrus species reveals the diversity and disease responsiveness of the GLP pangenes family

BMC Plant Biology
Citrus is an important nutritional fruit globally; however, its yield is affected by various stresses. This study presents the draft pangenome of Citrus, developed using 11 species to examine their genetic diversity and identify members of the germin ...
Muhammad Tahir ul Qamar, Kinza Fatima, Muhammad Junaid Rao, Qian Tang, Muhammad Sadaqat, Baopeng Ding, Ling-Ling Chen, Xi-Tong Zhu   +7 more
doaj   +1 more source

Comparative genomics of obligate predatory bacteria belonging to phylum Bdellovibrionota highlights distribution and predicted functions of lineage-specific protein families

mSphere
Comparative genomics of predatory bacteria is important to understand their ecology and evolution and explore their potential to treat drug-resistant infections.
Sidney C. Davis, Joseph Cerra, Laura E. Williams   +2 more
doaj   +1 more source

Advancing the Indian cattle pangenome: characterizing non-reference sequences in Bos indicus

Journal of Animal Science and Biotechnology
Background India harbors the world’s largest cattle population, encompassing over 50 distinct Bos indicus breeds. This rich genetic diversity underscores the inadequacy of a single reference genome to fully capture the genomic landscape of Indian cattle.
Sarwar Azam, Abhisek Sahu, Naveen Kumar Pandey, Mahesh Neupane, Curtis P Van Tassell, Benjamin D Rosen, Ravi Kumar Gandham, Subha Narayan Rath, Subeer S Majumdar   +8 more
doaj   +1 more source

Phenotypic Characterization and Genomic Mining of Uric Acid Catabolism Genes in Lactiplantibacillus plantarum YC

Foods
This study presents the phenotypic characterization and genomic mining of uric acid catabolism genes in Lactiplantibacillus plantarum YC, a novel food-grade lactic acid bacterium isolated from traditional fermented vegetables with potent uric acid ...
Yuqing Zhao, Sen Yang, Miao He, Peihan Chai, Zhenou Sun, Qiaomei Zhu, Zhenjing Li, Qingbin Guo, Huanhuan Liu   +8 more
doaj   +1 more source

Pangenome structures : design, construction, and applications

The human {pangenome represents a set of genomic sequences of diverse humans. Any two sequences from this set are likely to be identical in large subsequences. Differences (so-called variations) predominantly involve just one or a few nucleotides.
Büchler, Thomas
core   +1 more source

A protein language model unveils the E. coli pangenome functional landscape regulating host proteostasis

Daniel Martínez‐Martínez, Andreea Aprodu, Cassandra Backes, Filipe Cabreiro   +3 more
openalex   +2 more sources

A draft UAE-based Arab pangenome reference

Nature Communications
Pangenomes provide a robust and comprehensive portrayal of genetic diversity in humans, but Arab populations remain underrepresented. We present a preliminary UAE-based Arab Pangenome Reference (UPR) utilizing 53 individuals of diverse Arab ethnicities ...
Nasna Nassir, Mohamed A. Almarri, Muhammad Kumail, Nesrin Mohamed, Bipin Balan, Shehzad Hanif, Maryam AlObathani, Bassam Jamalalail, Hanan Elsokary, Dasuki Kondaramage, Suhana Shiyas, Noor Kosaji, Dharana Satsangi, Madiha Hamdi Saif Abdelmotagali, Ahmad Abou Tayoun, Olfat Zuhair Salem Ahmed, Douaa Fathi Youssef, Hanan Al Suwaidi, Ammar Albanna, Stefan S Du Plessis, Hamda Hassan Khansaheb, Alawi Alsheikh-Ali, Mohammed Uddin   +22 more
doaj   +1 more source

Pangenome assembly of cultivated flax and pale flax (Linum usitatissimum and L. bienne).

Brennan, Adrian, Esmé Padgett
openalex   +2 more sources