Results 71 to 80 of about 15,819 (203)

StrainPanDA Pre-built pangenome database

, 2021
Pre-built pangenome ...
yuxiang tan
core   +1 more source

Unlocking underutilized diversity for the next generation of oat improvement

New Phytologist, EarlyView.
Yu Guo, Martin Mascher
wiley   +1 more source

Personalized pangenome references [PDF]

International audiencePangenomes reduce reference bias by representing genetic diversity better than a single reference sequence. Yet when comparing a sample to a pangenome, variants in the pangenome that are not part of the sample can be misleading, for
Carroll, Andrew, Eskandar, Parsa, Chang, Xian, Chang, Pi-Chuan, Paten, Benedict, Kolmogorov, Mikhail, Eizenga, Jordan, M, Novak, Adam, M, Sirén, Jouni, Monlong, Jean, Ungaro, Matteo, Tommaso, Hickey, Glenn   +11 more
core   +2 more sources

Co-linear chaining on pangenome graphs

Algorithms for Molecular Biology
Pangenome reference graphs are useful in genomics because they compactly represent the genetic diversity within a species, a capability that linear references lack.
Jyotshna Rajput, Ghanshyam Chandra, Chirag Jain   +2 more
doaj   +1 more source

The graphical barley pangenome reveals micro- and macro-scale genetic variation

Agriculture Communications
Graphical pangenomes and orthologous gene clustering visualisations offer powerful tools to analyse, validate, and extract genomic variations within a species.
Brett Chapman, Viet Dang, Tianhua He, Camilla Hill, Haifei Hu, Penghao Wang, Philipp E. Bayer, David Edwards, Gabriel Keeble-Gagnère, Josquin Tibbits, Chengdao Li   +10 more
doaj   +1 more source

Chromosome-level Genome Assembly of Korean Long-tailed Chicken and Pangenome of 40 Gallus gallus Assemblies

Scientific Data
This study presents the first chromosome-level genome assembly of the Korean long-tailed chicken (KLC), a unique breed of Gallus gallus known as Ginkkoridak.
Hanshin D. Shin, Wonchoul Park, Han-ha Chai, Youngho Lee, Jaehoon Jung, Byung June Ko, Heebal Kim   +6 more
doaj   +1 more source

Structure of the Enterobacter pan-genome is revealed using machine learning

Microbiology Spectrum
The growing availability of publicly accessible Enterobacter genomes offers an opportunity to reveal the structure of its pangenome, uncovering the catalog of genes across the genus and their distribution across the different species and subspecies of ...
Joshua T. Burrows, Gaoyuan Li, Jonathan M. Monk, Siddharth M. Chauhan, Bernhard O. Palsson   +4 more
doaj   +1 more source

Accessing medically relevant complex regions with a pangenome graph of 20 near-complete Japanese haplotypes

Nature Communications
Pangenome projects have enhanced our understanding of human genomic and genetic diversity, but repetitive regions are still challenging to assemble and yet medically important.
Yoshihiko Suzuki, Chie Owa, Haruka Kobayashi, Ryo Nakabayashi, Brandy McNulty, Ivo Violich, Benedict Paten, Karen H. Miga, Shinichi Morishita   +8 more
doaj   +1 more source

Bacterial Pangenome

Проблемы особо опасных инфекций
This literature review provides an aggregate data on pan-genome studies since the early 2000s. In molecular biology and genetics, pan-genome is the totality of all genetic information on a group of organisms (species or monophyletic group of organisms ...
E. Yu. Agafonova
doaj   +1 more source

Roary (paralog_not_split): pangenome reference

, 2020
Roary: pangenome reference of whole collection (n=13 ...
GlobalPneumoSeq Sanger (7427966)
core   +1 more source