Results 71 to 80 of about 11,936 (226)

A stepwise guide for pangenome development in crop plants: an alfalfa (Medicago sativa) case study

BMC Genomics
Background The concept of pangenomics and the importance of structural variants is gaining recognition within the plant genomics community. Due to advancements in sequencing and computational technology, it has become feasible to sequence the entire ...
Harpreet Kaur, Laura M. Shannon, Deborah A. Samac   +2 more
doaj   +1 more source

PanRV: Pangenome-reverse vaccinology approach for identifications of potential vaccine candidates in microbial pangenome

BMC Bioinformatics, 2019
Background A revolutionary diversion from classical vaccinology to reverse vaccinology approach has been observed in the last decade. The ever-increasing genomic and proteomic data has greatly facilitated the vaccine designing and development process ...
Kanwal Naz, Anam Naz, Shifa Tariq Ashraf, Muhammad Rizwan, Jamil Ahmad, Jan Baumbach, Amjad Ali   +6 more
doaj   +1 more source

Reconfiguring biofortification strategies to transform food systems and address micronutrient deficiency of the 21st century

Journal of Integrative Plant Biology, EarlyView.
This review explores how to make staple foods and horticultural crops more nutritious, including how artificial intelligence‐based screening of gene banks helps deploy nutritionally rich germplasm into breeding. Genome editing can help develop crops richer in minerals, vitamins, and health‐promoting compounds, supporting healthier diets and more ...
Rhowell Jr. N. Tiozon, Alisdair R. Fernie, Nese Sreenivasulu   +2 more
wiley   +1 more source

Durum Wheat cv. Svevo Reference Genome Rel.2.0: A Comprehensive Tool for Wheat Genomics

Plant Biotechnology Journal, EarlyView.
ABSTRACT Advancements in plant genome sequencing and assembly have enabled the production of increasingly accurate and contiguous genome sequences. Here, we present the chromosome‐level assembly of the durum wheat (Triticum turgidum L. ssp. durum, cv. Svevo) reference genome produced using accurate long‐reads, optical mapping and Hi‐C. The new assembly
Elisabetta Mazzucotelli, Cristian Forestan, Gina Zastrow‐Hayes, David Swarbreck, Yael Lev‐Mirom, Emile Cavalet‐Giorsa, Matteo Bozzoli, Anna Maria Mastrangelo, Daniela Marone, Vincent Ranwez, Johanna Girodolle, Victor Llaca, Kevin Fengler, Charlotte Harris, Helena Toegelová, Pavla Navrátilová, Primetta Faccioli, Francesca Desiderio, Ana Paola Valladares, Gemy Kaithakottil, Rachel L. Rusholme‐Pilcher, Manuel Spannagl, Heidrun Gundlach, Klaus F. X. Mayer, Victoria C. Blake, Justin D. Faris, Steven S. Xu, Taner Z. Sen, Eric Yao, Julio Isidro y Sánchez, Chunyi Liu, Muhammad A. Farooq, Sandra Stefanelli, Chiara Cappucci, Leah Oren, Tamar Eilam, Mario Giorgioni, Alessandra Stella, Barbara Lazzari, Massimiliano Lauria, Aldo Ceriotti, Raul Pirona, Elahe Tavakol, Valentyna Klymiuk, Jennifer Ens, Harmeet Singh Chawla, Sean Walkowiak, Nicola Pecchioni, Filippo M. Bassi, Miguel Sanchez‐Garcia, Gabriella Sonnante, Pasquale L. Curci, Giovanni Giuliano, Giuseppe Aprea, Asher Pasha, Agata Gadaleta, Ilaria Marcotuli, Stefania Masci, Francesco Sestili, Samuela Palombieri, Davide Scaglione, Michele Morgante, Hana Šimková, Nicholas J. Provart, Simon G. Krattinger, Curtis J. Pozniak, Nathalie Chantret, Anthony Hall, Assaf Distelfeld, Roberto Tuberosa, Marco Maccaferri, Luigi Cattivelli   +71 more
wiley   +1 more source

Pangenomics of flax fungal parasite Fusarium oxysporum f. sp. lini

Frontiers in Plant Science
To assess the genomic diversity of Fusarium oxysporum f. sp. lini strains and compile a comprehensive gene repertoire, we constructed a pangenome using 13 isolates from four different clonal lineages, each exhibiting distinct levels of virulence ...
Anton Logachev, Alexander Kanapin, Tatyana Rozhmina, Vladislav Stanin, Mikhail Bankin, Anastasia Samsonova, Ekaterina Orlova, Maria Samsonova   +7 more
doaj   +1 more source

GmDOF3.1‐GmCPX Module Regulates Nodulation and Nitrogen Fixation Abilities in Soybean

Plant Biotechnology Journal, EarlyView.
ABSTRACT Soybean nodule nitrogen fixation is very important, which can provide a large amount of nitrogen supply for its own growth and that of other crops, but the mechanism is largely unclear. In the present study, a coproporphyrinogen oxidase gene, GmCPX, was identified to facilitate soybean nodulation and nitrogen‐fixation under the regulation of ...
Xinzhu Xing, Zhanwu Yang, Zhenqi Shao, Hui Du, Hua Zhang, Huantao Zhang, Xiaobo Huo, Wenlong Li, Youbin Kong, Xihuan Li, Caiying Zhang   +10 more
wiley   +1 more source

Defining Orthologs and Pangenome Size Metrics [PDF]

, 2015
Since the advent of ultra-massive sequencing techniques, the consequent drop-off in both price and time required made feasible the sequencing of increasingly more genomes from microbes belonging to the same taxonomic unit.
Emanuele Bosi, Renato Fani, Fondi, Marco, Fondi M., Marco Fondi, Bosi, Emanuele, Fani, Renato, Fani R., Bosi E.   +8 more
core   +1 more source

Revisiting the Molecular Roadmap for Sugar Crops: Genome Reading, Trait Writing and Variety Redesigning

Plant Biotechnology Journal, EarlyView.
ABSTRACT Sugar crops, including but not limited to sugarcane, sugar beet, sweet sorghum and stevia, are major sources of sugar production in the world. However, conventional breeding approaches, limited by long breeding cycles, low efficiency and restricted capacity to improve complex traits in sugar crops, are increasingly insufficient to address the ...
Peilin Wang, Qibin Wu, Wenzhi Wang, Prakash Lakshmanan, Yangrui Li, Khushi Muhammad, Yuguang Wang, Youxiong Que   +7 more
wiley   +1 more source

A Wild Emmer Wheat B3 Transcription Factor Regulates Seed Growth and Nutrient Allocation

Plant, Cell &Environment, EarlyView.
ABSTRACT Seed weight (SW) and nutrient allocation are key determinants of yield and grain quality in wheat, yet the regulatory basis of naturally occurring variation in these traits remains poorly resolved. Wild emmer wheat (Triticum dicoccoides), the progenitor of modern wheat, retains extensive eco‐geographically structured genetic diversity that was
Davinder Sharma, Zechariah Haber, Manas R. Prusty, Raz Avni, Mijal Perez, Moshe Ronen, Rakesh Kumar, Arava Shatil‐Cohen, Paz Haboub, Chen Omer, Gilor Kelly, Hadar Aviv, Adi Doron‐Faigenboim, Din Moshe, Weronika Jasinska, Leah Rosental, Eitan Millet, Hanan Sela, Or Sperling, Amir Sharon, Anna Mintz Dub, Yariv Brotman, Nir Sade   +22 more
wiley   +1 more source

Pangenome graph mitigates heterozygosity overestimation from mapping bias: a case study in Chinese indigenous pigs

BMC Biology
Background Breeds genetically distant from the reference genome often show considerable differences in DNA fragments, making it difficult to achieve accurate mappings.
Jian Miao, Qingyu Wang, Zhe Zhang, Qishan Wang, Yuchun Pan, Zhen Wang   +5 more
doaj   +1 more source