Results 61 to 70 of about 11,936 (226)

pangenome/smoothxg: v0.7.4 [PDF]

<h2>What's Changed</h2> <ul> <li>fix odgi viz underflow by @AndreaGuarracino in https://github.com/pangenome/smoothxg/pull/207</li> </ul> <p><strong>Full Changelog</strong>: https://github.com ...
Glenn Hickey, Simon Heumos, Andrea Guarracino, Adam Novak, Pjotr Prins, Jordan Eizenga, Erik Garrison   +6 more
core   +1 more source

Bos taurus pangenome graph [PDF]

, 2022
 The output file of hierarchical alignment (hal) of 14 Bos taurus genomes, including the Hanwoo assembly, was generated using the Minigraph-Cactus Pangenome Pipeline.
Jisung Jang (13907301)
core   +1 more source

From wild to tamed: Reimagining novel crops through omics and local plant diversity

PLANTS, PEOPLE, PLANET, EarlyView.
The global food system faces growing pressure from climate change, biodiversity loss, and rising nutritional demands. Agriculture has increased yields but reduced crop diversity, flavor, and nutritional quality, leaving societies vulnerable and dependent on a narrow set of staple species.
Alexandra Sanfeliu Meliá, Pablo D. Cárdenas   +1 more
wiley   +1 more source

Recent advances of emergent extraction technologies to enhance bioactive compounds extraction of microalgae—An overview towards application in cosmetics

International Journal of Cosmetic Science, EarlyView.
Microalgae extracts show immense potential in cosmetics for their bioactivities; emerging extraction techniques enhance bioactive compound yield from microalgae. Abstract Microalgae have attracted significant interest in numerous sectors, particularly in the cosmetic industries, owing to their rich composition of bioactive compounds. This paper aims to
Alireza Mousakhani Ganjeh, Lucília da P. da Silva, Carlos A. Pinto, Rosário Martins, Alexandra P. Marques, Jorge A. Saraiva   +5 more
wiley   +1 more source

Personalized pangenome references [PDF]

International audiencePangenomes reduce reference bias by representing genetic diversity better than a single reference sequence. Yet when comparing a sample to a pangenome, variants in the pangenome that are not part of the sample can be misleading, for
Carroll, Andrew, Eskandar, Parsa, Chang, Xian, Chang, Pi-Chuan, Paten, Benedict, Kolmogorov, Mikhail, Eizenga, Jordan, M, Novak, Adam, M, Sirén, Jouni, Monlong, Jean, Ungaro, Matteo, Tommaso, Hickey, Glenn   +11 more
core   +4 more sources

A survey of sequence-to-graph mapping algorithms in the pangenome era

Genome Biology
A pangenome can reveal the genetic diversity across different individuals simultaneously. It offers a more comprehensive reference for genome analysis compared to a single linear genome that may introduce allele bias.
Yingbo Cui, Chenchen Peng, Zeyu Xia, Canqun Yang, Yifei Guo   +4 more
doaj   +1 more source

Bony fish genomes: Status and gaps

Journal of Fish Biology, EarlyView.
Abstract Bony fish constitute an exceptionally species‐rich group of aquatic vertebrates, comprising more than 95% of all living fish. The adaptive processes on the diversity of environments they inhabit make them a highly diverse group from taxonomic, morphological and evolutionary standpoints.
Noelia Pérez‐Pereira, Carmen Bouza, Paulino Martínez, Diego Robledo   +3 more
wiley   +1 more source

Comparative genomics and pangenome-oriented studies reveal high homogeneity of the agronomically relevant enterobacterial plant pathogen Dickeya solani

BMC Genomics, 2020
Background Dickeya solani is an important plant pathogenic bacterium causing severe losses in European potato production. This species draws a lot of attention due to its remarkable virulence, great devastating potential and easier spread in contrast to ...
Agata Motyka-Pomagruk, Sabina Zoledowska, Agnieszka Emilia Misztak, Wojciech Sledz, Alessio Mengoni, Ewa Lojkowska   +5 more
doaj   +1 more source

Phenotypic Florfenicol Resistance in floR‐Harbouring Flavobacterium psychrophilum Isolates (CC‐ST90): A Case Study From Danish Freshwater Rainbow Trout Aquaculture

Journal of Fish Diseases, EarlyView.
ABSTRACT Monitoring antimicrobial resistance (AMR) in fish pathogens is essential for supporting sustainable aquaculture. In this study, susceptibility testing and genome sequencing were used to characterize the AMR profile of seven Flavobacterium psychrophilum originating from Danish rainbow trout farms (2019–2022).
Valentina L. Donati, Lone Madsen
wiley   +1 more source

PG-SGD Animations [PDF]

, 2023
The two GIFs show a snapshot after each epoch of the Path-Guided Stochastic Gradient Descent (PG-SGD) algorithm which is described in https://github.com/pangenome/sorting-paper.
Simon Heumos, Andrea Guarracino, Erik Garrison   +2 more
core   +1 more source