Results 61 to 70 of about 15,819 (203)
Pangenome rarefaction curves for the accessory compartment of each ST pangenome.
, 2023 Pangenome rarefaction curves for the accessory compartment of each ST pangenome.
Ian-Ling Yu (16559799) +7 more
core +1 more source
The Plant Genome, Volume 19, Issue 4, December 2026.Abstract Sugarcane (Saccharum spp. hybrids), the source of ∼80% of the worlds sugar, has experienced a plateau in genetic improvement over recent decades. This stagnation is largely due to the crop's complex polyploid genome and long breeding cycles, which limit the efficiency of traditional selection methods.
Natalya Vo Van‐Zivkovic +5 more
wiley +1 more source
<p>Pangenomes of multiple species for the "Cluster efficient pangenome graph construction with nf-core/pangenome" manuscript.</p> <p>Each pangenome is represented in a FASTA format file.
Heumos, Simon
core +1 more source
Beyond single references: pangenome graphs and the future of genomic medicine
Frontiers in GeneticsGenomic medicine relies on single reference genomes that miss crucial genetic diversity, creating diagnostic gaps that disproportionately affect underrepresented populations.
Denis M. Nyaga +4 more
doaj +1 more source
Metabolization of Flavan‐3‐ol Oligomers by Eggerthella lenta, a Human Gut Bacterium
Molecular Nutrition &Food Research, Volume 70, Issue 19, 15 October 2026.Novel human gut bacterial strains were isolated and characterized for their ability to metabolize flavan‐3‐ols. While Eggerthella lenta and Flavonifractor plautii metabolized flavan‐3‐ol monomers, only E. lenta converted B‐ and A‐type procyanidins, demonstrating that this gut bacterium can metabolize flavan‐3‐ol oligomers.
Ruben Halifa +10 more
wiley +1 more source
<h2>What's Changed</h2> <ul> <li>fix odgi viz underflow by @AndreaGuarracino in https://github.com/pangenome/smoothxg/pull/207</li> </ul> <p><strong>Full Changelog</strong>: https://github.com ...
Glenn Hickey +6 more
core +1 more source
PangeBlocks: customized construction of pangenome graphs via maximal blocks
BMC BioinformaticsBackground The construction of a pangenome graph is a fundamental task in pangenomics. A natural theoretical question is how to formalize the computational problem of building an optimal pangenome graph, making explicit the underlying optimization ...
Jorge Avila Cartes +4 more
doaj +1 more source
Benchmarking pangenome dynamics and horizontal gene transfer in Mycobacterium marinum evolution
Frontiers in MicrobiologyHorizontal gene transfer (HGT) is a key driver of microbial evolution, promoting genetic diversity and contributing to the emergence of antibiotic resistance. This study explores the pangenome dynamics and HGT in Mycobacterium marinum (M.
Khandker Shahed +5 more
doaj +1 more source
Durum Wheat cv. Svevo Reference Genome Rel.2.0: A Comprehensive Tool for Wheat Genomics
Plant Biotechnology Journal, Volume 24, Issue 10, Page 5460-5479, October 2026.ABSTRACT Advancements in plant genome sequencing and assembly have enabled the production of increasingly accurate and contiguous genome sequences. Here, we present the chromosome‐level assembly of the durum wheat (Triticum turgidum L. ssp. durum, cv. Svevo) reference genome produced using accurate long‐reads, optical mapping and Hi‐C. The new assembly
Elisabetta Mazzucotelli +71 more
wiley +1 more source
Constructing a draft Indian cattle pangenome using short-read sequencing
Communications BiologyIndian desi cattle, known for their adaptability and phenotypic diversity, represent a valuable genetic resource. However, a single reference genome often fails to capture the full extent of their genetic variation.
Sarwar Azam +8 more
doaj +1 more source