Results 41 to 50 of about 11,936 (226)
pangenome/smoothxg: v0.7.3 [PDF]
<h2>What's Changed</h2> <ul> <li>update odgi by @AndreaGuarracino in https://github.com/pangenome/smoothxg/pull/200</li> <li>update odgi by @AndreaGuarracino in https://github.com/pangenome/smoothxg/pull/201</li>
Glenn Hickey +6 more
core +1 more source
Element-based graph pangenome [PDF]
, 2023 Genomic analyses are based on using a single reference genome that does not represent the whole intraspecies diversity. Instead, a pangenome contains the whole genome content of a species.
LOPATRIELLO GIULIA
core
Gastric cancer genomics study using reference human pangenomes
Life Science AllianceUsing a concept called graph pangenome for many individual genomes as the baseline can improve the identification and characterization of large-sized genomic variations for disease genomics study.
Du Jiao +5 more
doaj +1 more source
Panakeia - a universal tool for bacterial pangenome analysis
BMC Genomics, 2022 Background Development of new pan-genome analysis tools is important, as the pangenome of a microbial species has become an important method to define the diversity of a selected taxon, most commonly a species, in the last years.
Sina Beier, Nicholas R Thomson
doaj +1 more source
mSystems, 2023 Gardnerella is the primary pathogenic bacterial genus present in the polymicrobial condition known as bacterial vaginosis (BV). Despite BV’s high prevalence and associated chronic and acute women’s health impacts, the Gardnerella pangenome is largely ...
Lillian R. Dillard +4 more
doaj +1 more source
nf-core/pangenome: pangenome 1.1.2 - canguro [PDF]
<p>release pangenome 1.1.2 - canguro</p ...
Simon Heumos +9 more
core +1 more source
Transposable element pangenome [PDF]
, 2022 A genome graph and associated GCSA index describing the transposable element pangenome derived from reference annotations and non-reference insertions from the HG00733 and HG002 ...
Guillaume Bourque +2 more
core +1 more source
Pangenomes and Selection: The Public Goods Hypothesis [PDF]
, 2020 Abstract The evolution and structure of prokaryotic genomes are largely shaped by horizontal gene transfer. This process is so prevalent that DNA can be seen as a public good—a resource that is shared across individuals, populations, and species. The consequence is a network of DNA sharing across prokaryotic life, whose extent is becoming apparent with
McInerney, James O. +4 more
openaire +2 more sources
<h2>What's Changed</h2> <ul> <li>Heuristic <code>wfmash</code> by @AndreaGuarracino in https://github.com/pangenome/pggb/pull/315</li> <li>make stats option consistent with help by @mbhall88 in https ...
Simon Heumos +8 more
core +1 more source
Roary (paralog_not_split): pangenome reference [PDF]
, 2020 Roary: pangenome reference of whole collection (n=13 ...
GlobalPneumoSeq Sanger (7427966)
core +1 more source