Results 41 to 50 of about 15,819 (203)
Integrative Zoology, EarlyView.Candidate genes identified from SNPs, indels, and SVs exhibited limited shared genes, suggesting that diverse variant types capture complementary aspects of the adaptive landscape. Our results underscore the importance of incorporating multiple types of genomic variation to achieve a more comprehensive understanding of evolutionary processes.
Qianghui Zhu +7 more
wiley +1 more source
BMC Genomics, 2020 Background Dickeya solani is an important plant pathogenic bacterium causing severe losses in European potato production. This species draws a lot of attention due to its remarkable virulence, great devastating potential and easier spread in contrast to ...
Agata Motyka-Pomagruk +5 more
doaj +1 more source
Journal of Fish Diseases, EarlyView.ABSTRACT Monitoring antimicrobial resistance (AMR) in fish pathogens is essential for supporting sustainable aquaculture. In this study, susceptibility testing and genome sequencing were used to characterize the AMR profile of seven Flavobacterium psychrophilum originating from Danish rainbow trout farms (2019–2022).
Valentina L. Donati, Lone Madsen
wiley +1 more source
A stepwise guide for pangenome development in crop plants: an alfalfa (Medicago sativa) case study
BMC GenomicsBackground The concept of pangenomics and the importance of structural variants is gaining recognition within the plant genomics community. Due to advancements in sequencing and computational technology, it has become feasible to sequence the entire ...
Harpreet Kaur +2 more
doaj +1 more source
Journal of Fish Diseases, EarlyView.ABSTRACT Piscine lactococcosis is an important bacterial disease of farmed fish. The causative agents, Lactococcus garvieae, Lactococcus petauri and Lactococcus formosensis, are closely related, which complicates species‐level identification. We developed a conventional multiplex PCR assay targeting species‐specific genes identified by comparative ...
Tomoaki Yoshino +9 more
wiley +1 more source
Bacterial microevolution and the Pangenome [PDF]
, 2020 The comparison of multiple genome sequences sampled from a bacterial population reveals considerable diversity in both the core and the accessory parts of the pangenome.
Xavier Didelot +3 more
core +1 more source
Pangenomics of flax fungal parasite Fusarium oxysporum f. sp. lini
Frontiers in Plant ScienceTo assess the genomic diversity of Fusarium oxysporum f. sp. lini strains and compile a comprehensive gene repertoire, we constructed a pangenome using 13 isolates from four different clonal lineages, each exhibiting distinct levels of virulence ...
Anton Logachev +7 more
doaj +1 more source
BMC Bioinformatics, 2019 Background A revolutionary diversion from classical vaccinology to reverse vaccinology approach has been observed in the last decade. The ever-increasing genomic and proteomic data has greatly facilitated the vaccine designing and development process ...
Kanwal Naz +6 more
doaj +1 more source
Recent advances in the genomics of sugarcane (Saccharum)
Journal of Integrative Plant Biology, EarlyView.This review systematically summarizes advances in sugarcane genomics, evolution, classification, and breeding practices. It identifies key research bottlenecks and proposes an integrated research framework to facilitate predictive sugarcane breeding, which provides valuable references for genetic improvement of other complex polyploid crops.
Tianyou Wang +5 more
wiley +1 more source
nf-core/pangenome: pangenome 1.1.0 - Schmuddlweddr
<h2>What's Changed</h2> <ul> <li>Update from Master to add DOI by @subwaystation in https://github.com/nf-core/pangenome/pull/137</li> <li>Update modules gfaffix, MultiQC, samtools/faidx by @subwaystation in https ...
Simon Heumos +9 more
core +1 more source